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KR054033.1__AKF14143.1__X__00083

Bact-Vir

KR054033.1__AKF14143.1__X__00083

Identity

Accession:
KR054033 ↗
Kingdom:
phage

Quality

91.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lindbergviridae› Pbunavirus› Pseudomonas_phage_DL68

TaxID: 1640974

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-58
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF22755.3 best E217_gp28 51.4 1.50e-13 84.2% 43.6%
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4cp6A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.72 44.0 2.62e-01 78.9% 8.9%
3iuwA00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.71 56.0 4.95e-01 84.2% 68.4%
1shyA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.70 54.0 4.41e-01 82.5% 56.9%
2as9A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.70 57.0 4.81e-01 89.5% 61.7%
1k28D03 2.40.30.150 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 0.69 56.0 4.69e-01 87.7% 55.8%
4l8jA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.68 54.0 4.58e-01 87.7% 60.0%
1s3iA02 3.10.25.10 Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › Formyl transferase, C-terminal domain 0.65 49.0 4.09e-01 82.5% 82.4%
1xg9A02 3.10.25.20 Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › 0.65 49.0 4.83e-01 84.2% 80.6%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 47.0 4.48e-01 82.5% 65.2%
2kl5A00 3.50.4.20 Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Uncharacterised protein DUF1027 0.64 47.0 3.78e-01 77.2% 92.7%
4xpmB00 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.62 40.0 3.82e-01 89.5% 55.2%
4amcA01 2.30.30.20 Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain 0.61 37.0 4.03e-01 86.0% 76.1%
2d9uA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 36.0 3.31e-01 70.2% 45.9%
3hmzA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 50.0 3.55e-01 100.0% 62.3%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 35.0 3.44e-01 75.4% 52.5%
2x9aA00 2.30.27.10 Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain 0.59 46.0 4.53e-01 91.2% 78.7%
1tolA01 2.30.27.10 Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain 0.58 47.0 4.20e-01 93.0% 62.2%
4maaA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.58 42.0 2.99e-01 93.0% 25.9%
2hesX00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 46.0 2.99e-01 96.5% 44.5%
4omfB02 3.10.450.750 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 33.0 3.60e-01 75.4% 70.2%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.56 38.0 3.86e-01 80.7% 71.9%
1g3pA01 2.30.27.10 Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain 0.56 46.0 3.96e-01 93.0% 58.0%
3mtsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 33.0 3.29e-01 70.2% 54.8%
1bywA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 43.0 3.55e-01 89.5% 96.4%
4efzB00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.54 43.0 2.73e-01 87.7% 31.5%
3kf6A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 41.0 3.25e-01 89.5% 77.2%
2mn5A00 3.30.30.140 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.53 40.0 4.03e-01 84.2% 92.9%
5tw4A02 2.30.140.20 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Penicillin-binding protein 4, C-terminal domain 0.53 36.0 3.44e-01 77.2% 59.4%
3al9A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 41.0 2.48e-01 89.5% 30.7%
2xa7M01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 35.0 2.80e-01 89.5% 33.3%
3quwA00 3.30.1330.40 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like 0.51 39.0 3.14e-01 87.7% 76.0%
5g5tA02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 34.0 2.45e-01 70.2% 84.8%
1g3pA02 3.90.450.1 Alpha Beta › Alpha-Beta Complex › Minor Coat Protein; domain 2 › Minor Coat Protein; Domain 2 0.50 41.0 3.56e-01 100.0% 64.4%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4879695 1.1.13.29 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › E217_gp28 0.87 79.0 5.95e-01 100.0% 43.2%
373012 1.1.9.14 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF3850 0.71 56.0 4.94e-01 84.2% 67.5%
3974369 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.67 53.0 4.65e-01 86.0% 60.0%
3202278 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.67 42.0 3.05e-01 75.4% 21.8%
3936663 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 52.0 4.13e-01 89.5% 59.2%
4650190 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.65 57.0 3.73e-01 100.0% 38.1%
3349972 1.1.7.55 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF6469 0.65 50.0 3.93e-01 86.0% 53.8%
3995788 389.4.1.7 ↗ few secondary structure elements › EGF-like › Fibulin-4 EGF-like 1 domain › Fibulin-4 EGF-like 1 domain › TIL_2 0.62 45.0 4.44e-01 91.2% 71.7%
4328622 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.60 47.0 3.78e-01 87.7% 44.3%
3563494 223.1.1.115 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PF30396 0.59 42.0 3.15e-01 91.2% 28.4%
4592145 4.6.1.6 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.59 40.0 3.62e-01 80.7% 51.2%
4013893 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.58 46.0 3.70e-01 89.5% 85.0%
406956 392.1.1.1 ↗ beta meanders › N-terminal domains of the minor coat protein g3p › N-terminal domains of the minor coat protein g3p › N-terminal domains of the minor coat protein g3p › Phage_Coat_A 0.58 46.0 4.51e-01 91.2% 77.4%
3894561 221.1.2.16 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › MTRES1_C 0.57 46.0 3.89e-01 91.2% 96.0%
3271880 223.2.1.23 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › NPR3 0.57 41.0 2.97e-01 93.0% 24.2%
3280385 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.57 38.0 3.89e-01 75.4% 70.9%
3410364 1.1.7.90 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ZNFX1 0.56 43.0 3.59e-01 87.7% 73.6%
137231 392.1.1.1 ↗ beta meanders › N-terminal domains of the minor coat protein g3p › N-terminal domains of the minor coat protein g3p › N-terminal domains of the minor coat protein g3p › Phage_Coat_A 0.56 46.0 4.52e-01 93.0% 83.6%
3901117 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.55 44.0 3.19e-01 93.0% 37.2%
3815852 60.1.1.10 ↗ beta barrels › SPOC domain-like › SPOC domain-related › SPOC domain › PF28898 0.55 42.0 3.28e-01 86.0% 100.0%
5016827 5090.1.1.11 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › S_layer_N 0.55 43.0 3.50e-01 91.2% 72.3%
3286654 223.1.1.37 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › Rv3651-like_N 0.55 38.0 3.28e-01 89.5% 43.0%
5019722 5090.1.1.6 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › S-layer 0.54 43.0 3.24e-01 93.0% 60.6%
4014948 3385.1.1.0 ↗ beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 0.54 44.0 3.76e-01 91.2% 97.9%
3264455 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.54 41.0 3.13e-01 87.7% 60.0%
4016026 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.54 39.0 2.84e-01 78.9% 36.3%
3435375 60.1.1.10 ↗ beta barrels › SPOC domain-like › SPOC domain-related › SPOC domain › PF28898 0.54 41.0 3.29e-01 87.7% 48.5%
3832419 319.1.1.13 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF26144 0.53 39.0 3.36e-01 84.2% 75.0%
3923528 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.52 40.0 2.62e-01 87.7% 19.7%
3309559 5.1.4.16 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.52 44.0 2.90e-01 100.0% 39.6%
4540278 4.6.1.6 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.52 39.0 3.45e-01 86.0% 77.4%
3714409 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 41.0 3.11e-01 96.5% 34.7%
5042812 387.1.3.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Colipase-like 0.51 35.0 3.76e-01 86.0% 91.1%
3727612 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.51 39.0 2.77e-01 80.7% 35.6%
4063185 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.51 37.0 3.40e-01 84.2% 83.5%
3386689 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.51 37.0 3.40e-01 80.7% 85.0%
3705036 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 38.0 2.78e-01 87.7% 96.8%
3925961 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.50 38.0 2.48e-01 87.7% 19.0%