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KR063279.1__AKL88204.1__GMA3_26__00026

Bact-Vir

KR063279.1__AKL88204.1__GMA3_26__00026

Identity

Accession:
KR063279 ↗
Kingdom:
phage

Quality

85.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Gamtrevirus› Gordonia_phage_GMA3

TaxID: 1647284

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 51-115
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zkeA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.78 53.0 4.91e-01 70.8% 77.8%
4nkwA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.77 53.0 3.11e-01 70.8% 11.6%
4h33A00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.68 47.0 4.23e-01 72.3% 93.4%
2d9dA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.65 47.0 4.29e-01 76.9% 84.3%
3rc3A05 1.20.58.1080 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 47.0 3.96e-01 78.5% 63.7%
1yiqA02 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.64 46.0 3.91e-01 75.4% 85.8%
2hi4A00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.64 47.0 2.88e-01 83.1% 42.3%
4l6v600 1.10.8.110 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Photosystem I, reaction centre, subunit PsaF 0.63 42.0 3.35e-01 87.7% 36.0%
3lszA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.57 41.0 3.41e-01 80.0% 72.8%
3ifrB02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 43.0 2.94e-01 83.1% 26.4%
3p5pA03 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.55 43.0 2.78e-01 84.6% 37.0%
3fhnA05 1.10.10.2270 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Dsl1p vesicle tethering complex, Tip20p subunit, domain E 0.53 37.0 3.74e-01 75.4% 95.5%
3q9oA02 3.90.1350.10 Alpha Beta › Alpha-Beta Complex › Exotoxin A, middle domain › Exotoxin A, middle domain 0.53 37.0 2.76e-01 73.8% 35.3%
4cq4B00 6.10.340.10 Special › Helix non-globular › hypothetical protein mp506/mpn330, domain 1 › 0.52 44.0 3.88e-01 98.5% 69.6%
7xhlD02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 40.0 2.57e-01 83.1% 67.0%
2ycdA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.51 38.0 3.23e-01 81.5% 51.3%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5053017 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.79 54.0 4.14e-01 70.8% 42.1%
5047797 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.78 53.0 5.08e-01 70.8% 66.7%
3691694 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.75 51.0 4.11e-01 70.8% 84.0%
3664654 109.4.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › 14-3-3 0.73 52.0 3.90e-01 75.4% 32.3%
3488983 150.1.1.1 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Ferritin 0.70 48.0 4.04e-01 70.8% 45.7%
3955770 606.1.1.0 ↗ alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.70 52.0 4.10e-01 78.5% 49.2%
3403421 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.69 50.0 3.81e-01 76.9% 54.7%
3939135 4163.1.1.0 ↗ alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like 0.68 49.0 3.94e-01 76.9% 95.4%
3356221 4030.1.1.14 ↗ alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › ERAP1_C 0.67 53.0 4.91e-01 87.7% 75.3%
3278712 174.1.1.4 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF4267 0.66 49.0 3.93e-01 80.0% 73.8%
5046484 5069.1.1.106 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › DUF998 0.63 45.0 3.11e-01 75.4% 28.1%
5002899 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.62 48.0 3.29e-01 83.1% 29.4%
4041823 1037.1.1.1 ↗ alpha bundles › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › LGT 0.58 43.0 2.89e-01 81.5% 70.7%
958896 604.2.1.1 ↗ alpha bundles › Spectrin repeat-like › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succ_DH_flav_C 0.57 43.0 3.75e-01 78.5% 70.8%
3471656 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.57 40.0 3.74e-01 73.8% 85.0%