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KR063279.1__AKL88247.1__GMA3_70__00070
Bact-VirKR063279.1__AKL88247.1__GMA3_70__00070
Identity
- Accession:
- KR063279 ↗
- Kingdom:
- phage
Quality
69.2
mean pLDDT
Taxonomy
TaxID: 1647284
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 14-64
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4chjA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.72 | 51.0 | 3.76e-01 | 74.5% | 31.5% |
| 3nyiB01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.67 | 49.0 | 3.45e-01 | 78.4% | 87.3% |
| 1a21A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 49.0 | 4.03e-01 | 100.0% | 44.9% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.63 | 47.0 | 4.44e-01 | 100.0% | 66.7% |
| 6julA02 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.62 | 44.0 | 3.54e-01 | 74.5% | 81.2% |
| 4gi3C00 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.62 | 39.0 | 3.87e-01 | 100.0% | 57.9% |
| 3nd1A02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.60 | 46.0 | 3.77e-01 | 100.0% | 41.8% |
| 1lktA00 | 2.170.14.10 | Mainly Beta › Beta Complex › Tailspike Protein; Chain › Phage P22 tailspike-like, N-terminal domain | 0.60 | 43.0 | 3.49e-01 | 100.0% | 38.5% |
| 1nrjA00 | 3.30.450.60 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.60 | 45.0 | 3.26e-01 | 82.4% | 32.7% |
| 4uzgA01 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 50.0 | 3.64e-01 | 100.0% | 39.7% |
| 3bcwA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.59 | 40.0 | 3.18e-01 | 100.0% | 33.7% |
| 1qr4A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 42.0 | 3.66e-01 | 100.0% | 47.1% |
| 2mv2A00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.58 | 43.0 | 3.23e-01 | 100.0% | 29.7% |
| 3weeA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.57 | 45.0 | 3.14e-01 | 88.2% | 92.3% |
| 4iajA00 | 3.30.1490.390 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 | 0.57 | 45.0 | 4.09e-01 | 100.0% | 63.2% |
| 2d93A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.57 | 40.0 | 3.09e-01 | 100.0% | 29.9% |
| 3rj2X00 | 2.60.120.1150 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 42.0 | 3.21e-01 | 100.0% | 32.3% |
| 4llgM00 | 3.10.20.510 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor | 0.57 | 41.0 | 4.12e-01 | 100.0% | 86.0% |
| 1wh2A01 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.57 | 40.0 | 3.91e-01 | 100.0% | 65.6% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.56 | 44.0 | 3.81e-01 | 100.0% | 53.3% |
| 1alo006 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.56 | 39.0 | 3.04e-01 | 76.5% | 75.4% |
| 2npnA02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.56 | 43.0 | 3.56e-01 | 100.0% | 44.0% |
| 2dk6A01 | 3.30.720.50 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.54 | 44.0 | 3.78e-01 | 100.0% | 79.8% |
| 3qnfC01 | 2.60.40.1730 | Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain | 0.54 | 42.0 | 2.89e-01 | 100.0% | 22.4% |
| 7c2fB01 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.53 | 43.0 | 3.62e-01 | 90.2% | 54.7% |
| 3wqbA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.52 | 46.0 | 3.21e-01 | 100.0% | 39.2% |
| 6b9tF01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 34.0 | 2.72e-01 | 100.0% | 28.0% |
| 3uh8A00 | 2.60.40.3350 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 42.0 | 3.30e-01 | 100.0% | 42.4% |
| 4m0wA03 | 2.60.120.1680 | Mainly Beta › Sandwich › Jelly Rolls › | 0.50 | 43.0 | 3.24e-01 | 100.0% | 94.2% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3925553 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.68 | 58.0 | 4.38e-01 | 100.0% | 61.5% |
| 5049764 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.67 | 45.0 | 3.48e-01 | 70.6% | 84.3% |
| 4089566 | 3857.1.1.1 ↗ | beta sandwiches › Head-binding domain of phage P22 tailspike protein › Head-binding domain of phage P22 tailspike protein › Head-binding domain of phage P22 tailspike protein › Head_binding | 0.66 | 47.0 | 3.86e-01 | 100.0% | 41.1% |
| 3958896 | 4187.2.1.0 ↗ | a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 | 0.62 | 47.0 | 4.53e-01 | 98.0% | 75.0% |
| 3333678 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 43.0 | 4.58e-01 | 78.4% | 95.6% |
| 3502158 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.58 | 42.0 | 2.95e-01 | 98.0% | 25.2% |
| 5011218 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.58 | 48.0 | 4.09e-01 | 94.1% | 61.2% |
| 3594014 | 2007.2.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II | 0.58 | 47.0 | 3.14e-01 | 100.0% | 20.4% |
| 3783481 | 11.1.1.642 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig-like_Pom152_1 | 0.57 | 44.0 | 3.42e-01 | 86.3% | 87.5% |
| 5014007 | 3115.2.1.0 ↗ | a+b two layers › GP2-like › GP2 › GP2 | 0.57 | 43.0 | 4.31e-01 | 100.0% | 80.0% |
| 3250477 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.57 | 41.0 | 3.22e-01 | 80.4% | 81.5% |
| 5000843 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.56 | 47.0 | 3.59e-01 | 92.2% | 61.7% |
| 3925464 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.56 | 38.0 | 3.42e-01 | 100.0% | 47.5% |
| 3385583 | 288.1.1.1 ↗ | a+b four layers › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › Cu-oxidase_4 | 0.54 | 45.0 | 3.07e-01 | 100.0% | 49.5% |
| 164160 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.54 | 44.0 | 3.69e-01 | 100.0% | 73.5% |
| 4035839 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.53 | 44.0 | 3.53e-01 | 100.0% | 80.9% |