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KR063280.1__AKL88305.1__GMA6_24__00024

Bact-Vir

KR063280.1__AKL88305.1__GMA6_24__00024

Identity

Accession:
KR063280 ↗
Kingdom:
phage

Quality

61.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bendigovirus› Gordonia_phage_GMA6

TaxID: 1647285

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 118-191
PDB
Domain cluster: rep: MK016493.1__AYQ99236.1__PBI_CANTARE_15__00015__D91-156
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.51 43.0 3.60e-01 93.2% 73.3%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 39.0 3.46e-01 85.1% 73.6%
4jg2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 40.0 3.03e-01 87.8% 82.7%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3167721 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 44.0 4.10e-01 70.3% 71.6%
4232994 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.56 36.0 3.18e-01 71.6% 43.6%
3595936 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 43.0 2.81e-01 86.5% 82.1%
3332026 331.3.1.28 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF220 0.53 39.0 2.98e-01 81.1% 44.7%
3258662 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.52 36.0 2.90e-01 73.0% 91.0%
3779302 7026.1.1.5 ↗ beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › ATG2_CAD 0.52 39.0 2.64e-01 82.4% 70.4%
4873215 1.1.13.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2001 0.50 36.0 3.02e-01 78.4% 73.6%