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KR063280.1__AKL88345.1__GMA6_64__00064
Bact-VirKR063280.1__AKL88345.1__GMA6_64__00064
Identity
- Accession:
- KR063280 ↗
- Kingdom:
- phage
Quality
67.3
mean pLDDT
Taxonomy
TaxID: 1647285
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 22-76
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5axmB00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.75 | 55.0 | 3.56e-01 | 98.2% | 18.0% |
| 2nycA00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.65 | 44.0 | 3.32e-01 | 70.9% | 90.8% |
| 4yleA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.63 | 43.0 | 3.14e-01 | 70.9% | 55.5% |
| 3pjvD01 | 3.30.110.200 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › | 0.63 | 54.0 | 4.89e-01 | 100.0% | 87.2% |
| 6l2cB00 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.62 | 48.0 | 2.90e-01 | 85.5% | 56.4% |
| 3l8aA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.60 | 52.0 | 3.76e-01 | 96.4% | 60.9% |
| 7ly5B01 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.60 | 46.0 | 3.34e-01 | 83.6% | 37.9% |
| 3mcpA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.59 | 50.0 | 3.27e-01 | 94.5% | 44.8% |
| 4q8gA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.58 | 43.0 | 2.59e-01 | 78.2% | 16.6% |
| 3llcA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.58 | 47.0 | 3.17e-01 | 100.0% | 59.4% |
| 1wdvA00 | 3.90.960.10 | Alpha Beta › Alpha-Beta Complex › YbaK protein › YbaK/aminoacyl-tRNA synthetase-associated domain | 0.57 | 34.0 | 2.57e-01 | 76.4% | 21.3% |
| 3ksmA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 40.0 | 2.97e-01 | 76.4% | 58.0% |
| 2z86D02 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.54 | 40.0 | 2.58e-01 | 80.0% | 86.2% |
| 4arvA02 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.52 | 41.0 | 3.16e-01 | 85.5% | 75.4% |
| 2y8yA02 | 3.30.70.1210 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 | 0.52 | 38.0 | 3.04e-01 | 78.2% | 74.8% |
| 3obaA03 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.52 | 37.0 | 2.33e-01 | 76.4% | 34.0% |
| 4c1sA00 | 1.50.10.20 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.51 | 44.0 | 2.69e-01 | 100.0% | 29.1% |
| 2k6vA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 37.0 | 2.67e-01 | 80.0% | 61.0% |
| 2qrdE01 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.50 | 43.0 | 3.02e-01 | 98.2% | 88.3% |
| 3no8A00 | 2.60.120.820 | Mainly Beta › Sandwich › Jelly Rolls › PHR domain | 0.50 | 35.0 | 2.51e-01 | 72.7% | 42.7% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3252212 | 283.2.1.0 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like | 0.71 | 65.0 | 5.74e-01 | 100.0% | 72.0% |
| 3213842 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.68 | 61.0 | 3.76e-01 | 96.4% | 19.6% |
| 3786957 | 4291.1.1.1 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP | 0.62 | 55.0 | 3.22e-01 | 98.2% | 93.9% |
| 4980789 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.62 | 55.0 | 3.25e-01 | 100.0% | 38.1% |
| 3497680 | 5054.1.1.63 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans, YVC1_C | 0.62 | 48.0 | 3.01e-01 | 92.7% | 23.6% |
| 4230708 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.59 | 47.0 | 3.46e-01 | 85.5% | 84.3% |
| 3421312 | 263.1.1.1 ↗ | a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF | 0.58 | 44.0 | 4.10e-01 | 83.6% | 71.4% |
| 3818705 | 263.1.1.1 ↗ | a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF | 0.56 | 46.0 | 4.01e-01 | 87.3% | 91.3% |
| 3176554 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.56 | 40.0 | 2.64e-01 | 80.0% | 73.5% |
| 4113442 | 101.26.1.2 ↗ | alpha arrays › HTH › Tex N-terminal domain › Tex N-terminal domain › HTH_44 | 0.56 | 42.0 | 3.13e-01 | 81.8% | 44.8% |
| 4880634 | 223.3.1.1 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase | 0.55 | 38.0 | 3.72e-01 | 74.5% | 67.8% |
| 3710982 | 7581.1.1.1 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N | 0.52 | 40.0 | 2.69e-01 | 92.7% | 44.0% |
| 2440220 | 223.3.1.1 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase | 0.52 | 37.0 | 3.66e-01 | 76.4% | 72.9% |
| 141070 | 223.3.1.1 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase | 0.51 | 35.0 | 3.49e-01 | 76.4% | 70.2% |
| 3272269 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.51 | 36.0 | 2.37e-01 | 74.5% | 22.3% |
| 3531794 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.51 | 39.0 | 2.70e-01 | 81.8% | 53.5% |
| 4537675 | 4203.1.1.1 ↗ | few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 | 0.50 | 34.0 | 3.44e-01 | 70.9% | 87.3% |
D2
medium
residues 87-128
Domain cluster:
representative