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KR063280.1__AKL88394.1__GMA6_113__00113

Bact-Vir

KR063280.1__AKL88394.1__GMA6_113__00113

Identity

Accession:
KR063280 ↗
Kingdom:
phage

Quality

67.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bendigovirus› Gordonia_phage_GMA6

TaxID: 1647285

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 5-37
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6gpkA02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.58 41.0 3.10e-01 87.9% 56.0%
5flxf00 6.20.50.150 Special › Other non-globular › N-terminal domain of TfIIb › 0.57 42.0 3.45e-01 90.9% 39.7%
5fl3A01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 35.0 2.77e-01 78.8% 35.0%
2k4xA01 6.20.50.180 Special › Other non-globular › N-terminal domain of TfIIb › 0.51 36.0 3.65e-01 90.9% 82.9%
3jvvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.50 34.0 2.71e-01 78.8% 35.0%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3200395 7523.1.1.10 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › HisG 0.54 41.0 2.94e-01 97.0% 36.8%
4183859 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.53 38.0 2.30e-01 100.0% 27.0%
3275726 3289.1.1.8 ↗ alpha complex topology › Nck-associated protein 1/Cytoplasmic FMR1-interacting protein 1 › Nck-associated protein 1/Cytoplasmic FMR1-interacting protein 1 › Nck-associated protein 1/Cytoplasmic FMR1-interacting protein 1 › Strumpellin 0.52 36.0 1.94e-01 75.8% 11.3%
3949260 4120.1.1.0 ↗ few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP 0.51 35.0 2.64e-01 78.8% 35.5%
4475639 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.51 39.0 2.80e-01 100.0% 35.6%
2554619 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.50 33.0 2.03e-01 87.9% 9.4%
D2 medium residues 45-86
PDB