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KR063281.1__AKJ72551.1__GMA2_13__00013

Bact-Vir

KR063281.1__AKJ72551.1__GMA2_13__00013

Identity

Accession:
KR063281 ↗
Kingdom:
phage

Quality

52.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Gimaduovirus› Gordonia_phage_GMA2

TaxID: 1647283

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 182-239
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.94 67.0 7.28e-01 74.1% 92.0%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.91 62.0 6.61e-01 70.7% 92.2%
3h8zA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.87 60.0 6.56e-01 72.4% 97.9%
2ckkA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.84 59.0 6.02e-01 74.1% 91.2%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.82 56.0 5.44e-01 70.7% 84.4%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.82 56.0 4.33e-01 70.7% 46.2%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.82 62.0 6.32e-01 81.0% 92.9%
1sf9A02 2.30.30.340 Mainly Beta › Roll › SH3 type barrels. › Hypothetical protein YfhH like domains 0.81 64.0 6.65e-01 87.9% 90.7%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.81 64.0 6.03e-01 89.7% 71.0%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 61.0 5.96e-01 87.9% 77.8%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 64.0 5.92e-01 100.0% 73.2%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 66.0 6.56e-01 100.0% 91.5%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 63.0 6.07e-01 98.3% 80.3%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.75 61.0 5.12e-01 87.9% 64.2%
3a2yA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.75 58.0 4.05e-01 84.5% 39.5%
2p84A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.74 62.0 5.76e-01 91.4% 72.6%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 58.0 4.90e-01 96.6% 54.2%
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 56.0 5.07e-01 87.9% 90.1%
3ceyB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 61.0 4.57e-01 96.6% 47.5%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 57.0 5.10e-01 96.6% 63.9%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.68 54.0 5.34e-01 87.9% 90.0%
3k8uA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.67 50.0 3.94e-01 82.8% 44.3%
4ry2A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.67 50.0 3.87e-01 84.5% 39.0%
3b79A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.66 49.0 3.88e-01 81.0% 42.4%
3ervA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.64 54.0 3.78e-01 96.6% 90.0%
2jiiA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.64 52.0 4.27e-01 91.4% 90.9%
3gqbA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.64 51.0 4.80e-01 86.2% 90.1%
2wssA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.62 50.0 4.30e-01 89.7% 69.9%
2aj2A01 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.61 47.0 4.02e-01 86.2% 54.6%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.59 47.0 4.11e-01 87.9% 72.2%
3zfnA02 2.30.140.40 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Pestivirus Npro endopeptidase C53, interaction domain 0.57 43.0 4.35e-01 82.8% 98.2%
1jqpA01 2.40.128.80 Mainly Beta › Beta Barrel › Lipocalin › Cathepsin C, exclusion domain 0.56 43.0 3.61e-01 89.7% 100.0%
5flwA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 46.0 2.97e-01 100.0% 46.0%
1ei5A02 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.54 41.0 3.74e-01 89.7% 59.8%
1ud9A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.54 39.0 2.68e-01 81.0% 37.2%
3dasA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 44.0 2.84e-01 100.0% 60.5%
3ei3A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 45.0 2.86e-01 100.0% 39.9%
4u3qB00 2.40.128.640 Mainly Beta › Beta Barrel › Lipocalin › 0.53 45.0 3.87e-01 100.0% 97.0%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.53 43.0 2.79e-01 93.1% 22.9%
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.53 41.0 3.53e-01 91.4% 100.0%
3hrpA02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.52 43.0 2.82e-01 100.0% 58.2%
4aezA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 43.0 2.77e-01 96.6% 85.3%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.52 36.0 3.72e-01 77.6% 91.1%
2m7oA00 3.10.450.400 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Uncharacterised protein PF15513, DUF4651 0.52 41.0 3.93e-01 89.7% 82.9%
2iz4A01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.52 34.0 3.67e-01 75.9% 79.6%
3a5pA00 2.60.200.70 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.51 42.0 3.55e-01 96.6% 89.3%
2b4wA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.50 42.0 2.77e-01 100.0% 44.3%
ECOD (82)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3625264 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.92 64.0 5.30e-01 72.4% 50.5%
3701950 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.90 71.0 7.03e-01 82.8% 85.0%
3928136 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.88 66.0 6.57e-01 79.3% 93.3%
3323530 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.88 63.0 6.09e-01 75.9% 87.7%
3786430 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.87 62.0 6.66e-01 74.1% 92.0%
4251669 4.1.1.76 ↗ beta barrels › SH3 › SH3 › SH3 › NdhO 0.87 64.0 6.01e-01 77.6% 94.3%
171891 4.1.1.110 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_FRX1 0.87 60.0 6.20e-01 72.4% 85.5%
4950396 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.86 65.0 6.69e-01 100.0% 83.6%
3931805 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.86 58.0 6.26e-01 70.7% 96.0%
3934192 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.86 61.0 6.04e-01 74.1% 88.3%
3784334 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.86 67.0 6.63e-01 82.8% 85.0%
4191690 4.1.1.98 ↗ beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.86 67.0 6.75e-01 82.8% 86.2%
3514556 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.85 66.0 6.19e-01 82.8% 81.4%
3964846 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.85 66.0 5.74e-01 82.8% 60.0%
3302818 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.84 66.0 6.74e-01 93.1% 87.3%
4579331 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.84 64.0 6.25e-01 87.9% 74.6%
5057234 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 61.0 5.74e-01 77.6% 67.1%
3684909 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.83 65.0 6.69e-01 96.6% 87.3%
3843554 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.83 57.0 5.36e-01 72.4% 80.0%
3244497 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.83 66.0 4.75e-01 84.5% 68.7%
3300226 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.83 61.0 5.41e-01 77.6% 93.8%
603 4.1.1.62 ↗ beta barrels › SH3 › SH3 › SH3 › DUF1811 0.83 64.0 6.67e-01 87.9% 90.6%
5033075 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 61.0 6.32e-01 98.3% 83.6%
3931904 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.82 62.0 6.42e-01 93.1% 85.5%
3609597 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.82 64.0 6.36e-01 94.8% 80.0%
3278801 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.82 64.0 6.15e-01 82.8% 73.8%
4995678 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 56.0 5.81e-01 72.4% 85.5%
4084190 4.1.1.98 ↗ beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.82 65.0 6.48e-01 84.5% 86.4%
4116921 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.82 64.0 6.33e-01 82.8% 81.7%
4225207 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.82 63.0 6.30e-01 96.6% 80.0%
4611708 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.82 64.0 6.32e-01 82.8% 81.7%
4331473 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.81 63.0 5.63e-01 82.8% 62.5%
3839849 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.81 63.0 6.11e-01 82.8% 75.4%
3989139 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.81 63.0 6.09e-01 84.5% 73.8%
3781711 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.81 64.0 6.61e-01 96.6% 89.1%
3308545 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.81 60.0 4.25e-01 77.6% 41.9%
3398496 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.81 58.0 6.00e-01 75.9% 87.3%
4662947 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.81 63.0 6.06e-01 82.8% 75.4%
4931822 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 61.0 5.84e-01 79.3% 73.8%
3503291 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.81 64.0 5.08e-01 91.4% 44.5%
3688068 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.81 67.0 4.85e-01 89.7% 35.3%
1408049 4.1.1.217 ↗ beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.81 62.0 4.65e-01 82.8% 39.0%
4347999 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.80 64.0 6.14e-01 84.5% 75.4%
3852545 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 62.0 6.16e-01 82.8% 88.3%
3486330 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 57.0 6.09e-01 91.4% 88.0%
4031947 4.1.1.62 ↗ beta barrels › SH3 › SH3 › SH3 › DUF1811 0.79 61.0 6.45e-01 86.2% 96.0%
3363448 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.77 66.0 5.81e-01 94.8% 87.1%
4184660 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 59.0 4.53e-01 82.8% 41.5%
3550644 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 56.0 5.80e-01 77.6% 85.5%
3669214 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.76 64.0 4.93e-01 93.1% 85.4%
3354687 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.76 61.0 4.76e-01 86.2% 57.5%
3862126 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.76 63.0 6.28e-01 100.0% 86.7%
5064571 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 61.0 5.21e-01 86.2% 72.2%
4932696 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.75 62.0 5.11e-01 89.7% 62.0%
3795384 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 65.0 4.23e-01 100.0% 25.1%
4962327 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.74 51.0 5.23e-01 72.4% 80.0%
4980648 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 61.0 5.73e-01 91.4% 78.6%
3603357 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 57.0 5.90e-01 89.7% 89.1%
3961546 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.73 56.0 5.46e-01 91.4% 75.4%
4947695 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 55.0 5.10e-01 82.8% 93.3%
5036616 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.71 59.0 5.52e-01 91.4% 77.1%
4669027 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.70 54.0 3.58e-01 84.5% 29.2%
5066141 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.69 56.0 5.43e-01 91.4% 83.1%
4995784 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 60.0 5.53e-01 100.0% 88.0%
4975150 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 54.0 5.38e-01 89.7% 85.0%
3634374 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.67 47.0 5.06e-01 75.9% 86.0%
3968842 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.67 51.0 4.05e-01 86.2% 40.8%
3850131 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 57.0 5.03e-01 96.6% 74.1%
4526316 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.64 52.0 4.36e-01 87.9% 67.4%
3971321 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.62 47.0 4.52e-01 86.2% 88.4%
3993013 5.1.4.90 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Itfg2 0.61 42.0 2.63e-01 72.4% 21.5%
3266581 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 41.0 2.45e-01 72.4% 16.4%
5016556 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 49.0 4.30e-01 96.6% 86.7%
3692168 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 38.0 2.22e-01 70.7% 14.0%
3647399 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 44.0 2.68e-01 93.1% 15.1%
2184 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 43.0 2.77e-01 93.1% 22.2%
4355548 558.1.1.26 ↗ alpha duplicates or obligate multimers › Lis-homology dimerization domain › Lis-homology dimerization domain › Lis-homology dimerization domain › WD40 0.53 45.0 2.73e-01 100.0% 25.1%
4581502 391.1.2.3 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › SVWC 0.52 36.0 3.38e-01 74.1% 62.7%
3682604 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 43.0 2.45e-01 100.0% 44.4%
3578232 77.3.1.4 ↗ beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › PF28998 0.51 38.0 2.65e-01 81.0% 24.9%
3719195 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 43.0 2.74e-01 100.0% 36.8%
3512265 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 42.0 2.74e-01 100.0% 36.8%