Back to structures

KR063281.1__AKJ72585.1__GMA2_47__00047

Bact-Vir

KR063281.1__AKJ72585.1__GMA2_47__00047

Identity

Accession:
KR063281 ↗
Kingdom:
phage

Quality

78.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-35_86-151
PDB
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ynfA00 3.75.10.20 Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › Succinylarginine dihydrolase 0.62 47.0 3.10e-01 81.8% 95.3%
4rm7A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.61 52.0 4.67e-01 99.0% 66.9%
3cexA00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.58 51.0 4.23e-01 94.9% 92.4%
1tj7A02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.58 52.0 3.77e-01 100.0% 81.7%
3sfvB02 6.10.140.2010 Special › Helix non-globular › Helix Hairpins › 0.58 52.0 4.10e-01 99.0% 75.5%
1rx0A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.57 51.0 4.43e-01 99.0% 64.5%
5af7B03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.57 52.0 4.53e-01 99.0% 66.9%
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.57 50.0 4.72e-01 99.0% 80.5%
2kq9A00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.57 48.0 4.60e-01 89.9% 87.5%
1ivhA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.57 50.0 4.46e-01 99.0% 68.8%
2p1aB01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.56 48.0 4.25e-01 94.9% 93.8%
7t7kA01 1.20.930.60 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.56 50.0 4.74e-01 98.0% 100.0%
8cdaB03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.55 49.0 4.20e-01 99.0% 72.3%
2jx0A00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.55 46.0 4.20e-01 100.0% 70.2%
5kp7B00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.55 30.0 3.30e-01 75.8% 65.8%
2uuiA00 1.20.120.550 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Membrane associated eicosanoid/glutathione metabolism-like domain 0.54 46.0 3.93e-01 94.9% 58.7%
3b8mC02 1.10.287.210 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 39.0 3.84e-01 86.9% 72.1%
7oq4Z01 1.20.120.950 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein DUF5062 0.53 39.0 4.00e-01 94.9% 80.6%
7aqbB02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.53 40.0 3.25e-01 80.8% 78.6%
3ufbA01 1.20.1260.30 Mainly Alpha › Up-down Bundle › Ferritin › N6 adenine-specific DNA methyltransferase, N-terminal domain 0.53 45.0 3.95e-01 98.0% 64.2%
1tj7A01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.52 42.0 4.16e-01 100.0% 82.9%
4lqqB00 1.20.140.30 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › MOB kinase activator 0.51 46.0 4.07e-01 100.0% 84.2%
3nrtA00 6.20.350.10 Special › Other non-globular › Actin; Chain A, domain 4 › 0.51 32.0 3.35e-01 91.9% 68.8%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3391090 7004.1.1.0 0.64 39.0 4.02e-01 86.9% 63.2%
5053794 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.64 55.0 5.03e-01 92.9% 82.3%
3788423 604.1.1.132 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › KAR9 0.59 41.0 4.07e-01 70.7% 69.5%
3599341 5051.1.1.0 alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like 0.58 45.0 3.09e-01 83.8% 71.4%
4887185 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.57 40.0 3.91e-01 70.7% 79.2%
3234976 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.57 40.0 3.87e-01 70.7% 96.4%
5002025 601.33.1.1 alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › CHAD 0.53 48.0 4.16e-01 100.0% 81.3%
4300460 3681.1.1.0 a+b complex topology › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit 0.50 36.0 3.60e-01 74.7% 95.2%
D2 medium residues 36-85
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.72 57.0 5.32e-01 86.0% 96.8%
2dt5B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 59.0 5.27e-01 94.0% 65.8%
1rp3G02 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.71 60.0 4.44e-01 100.0% 38.7%
3h4cA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.70 54.0 4.35e-01 84.0% 62.5%
1c0wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 55.0 4.91e-01 90.0% 64.4%
4jd9G00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.67 50.0 3.79e-01 80.0% 43.3%
2d68A00 1.20.960.40 Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › 0.67 44.0 3.79e-01 84.0% 45.3%
3p42A02 6.10.250.2280 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.66 51.0 4.55e-01 84.0% 100.0%
1ma1A01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.66 52.0 4.80e-01 100.0% 67.2%
1gs0A01 1.20.142.10 Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › Poly(ADP-ribose) polymerase, regulatory domain 0.65 49.0 3.66e-01 98.0% 31.8%
3keoA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 54.0 4.85e-01 96.0% 69.4%
3iieB03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.64 44.0 3.72e-01 72.0% 48.2%
2x48A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 44.0 4.35e-01 92.0% 68.5%
1ak2A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.63 42.0 2.72e-01 86.0% 15.5%
1l0oC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 52.0 5.07e-01 100.0% 89.5%
2w43A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.63 53.0 5.12e-01 96.0% 98.2%
1gnlA01 1.20.1270.20 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.62 50.0 3.71e-01 100.0% 33.1%
6yigA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.62 43.0 3.62e-01 74.0% 77.3%
1hlvA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 50.0 4.79e-01 96.0% 96.7%
3ugsB00 3.40.1180.10 Alpha Beta › 3-Layer(aba) Sandwich › Undecaprenyl pyrophosphate synthetase › Decaprenyl diphosphate synthase-like 0.62 47.0 3.11e-01 82.0% 78.8%
3aagA01 3.40.1380.40 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › 0.60 47.0 3.50e-01 92.0% 57.3%
2ph5A02 3.30.360.30 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › homospermidine synthase like 0.59 49.0 3.07e-01 96.0% 83.8%
3zhiA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.56 41.0 3.75e-01 82.0% 78.1%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4023609 101.1.1.28 alpha arrays › HTH › HTH › Three-helical HTH › SWIRM 0.80 66.0 5.28e-01 90.0% 49.5%
5082532 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.79 53.0 4.74e-01 70.0% 51.4%
3969413 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.79 54.0 4.83e-01 72.0% 51.4%
4988046 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 62.0 6.28e-01 94.0% 92.0%
4331721 101.1.1.225 alpha arrays › HTH › HTH › Three-helical HTH › DUF6262 0.76 61.0 5.49e-01 96.0% 64.3%
3702175 101.1.15.0 alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.75 61.0 5.10e-01 92.0% 52.9%
3943035 639.2.1.0 alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) 0.74 59.0 5.39e-01 86.0% 93.8%
4009124 639.2.1.5 alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › PF27475 0.74 56.0 5.32e-01 82.0% 100.0%
5040366 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 63.0 5.99e-01 96.0% 80.0%
3702325 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 64.0 6.20e-01 98.0% 96.4%
3595890 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.72 63.0 4.29e-01 100.0% 76.4%
3264367 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 62.0 4.92e-01 98.0% 55.0%
3947132 101.1.1.109 alpha arrays › HTH › HTH › Three-helical HTH › DUF2543 0.71 57.0 4.99e-01 90.0% 58.7%
3180104 101.1.15.1 alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS 0.70 53.0 4.37e-01 84.0% 45.6%
4951456 210.1.2.0 a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain 0.70 55.0 3.20e-01 86.0% 17.4%
3535014 101.1.2.161 alpha arrays › HTH › HTH › winged helix domain › NOD2_WH 0.70 56.0 5.20e-01 98.0% 70.8%
4168631 101.1.6.20 alpha arrays › HTH › HTH › TrpR › PF28388 0.70 51.0 5.16e-01 92.0% 80.0%
3711450 101.1.15.0 alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.69 54.0 4.58e-01 84.0% 52.5%
3662905 101.1.1.29 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.69 58.0 5.72e-01 98.0% 90.9%
5057164 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 55.0 4.44e-01 90.0% 50.0%
3274011 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.68 60.0 5.49e-01 98.0% 84.6%
4131842 101.1.3.25 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Sigma70_r3 0.68 58.0 5.18e-01 100.0% 70.7%
4253264 101.1.1.29 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.68 58.0 5.15e-01 100.0% 69.3%
4076621 101.1.1.29 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.67 55.0 5.51e-01 96.0% 100.0%
185830 558.1.1.2 alpha duplicates or obligate multimers › Lis-homology dimerization domain › Lis-homology dimerization domain › Lis-homology dimerization domain › FOP_dimer 0.67 44.0 3.79e-01 84.0% 45.3%
3851347 101.1.2.235 alpha arrays › HTH › HTH › winged helix domain › Nlrc4-like_WHD 0.66 51.0 4.69e-01 96.0% 64.3%
5026703 2004.1.1.76 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.65 55.0 3.32e-01 96.0% 35.1%
4086835 101.1.1.29 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.65 53.0 4.71e-01 98.0% 62.5%
4954772 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.64 53.0 5.19e-01 96.0% 83.6%
4452303 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.64 52.0 4.91e-01 98.0% 81.5%
None 0.63 51.0 3.74e-01 100.0% 32.1%
2439 101.1.1.29 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.63 52.0 5.07e-01 100.0% 89.5%
3978934 101.1.2.826 alpha arrays › HTH › HTH › winged helix domain › KfrA_N 0.63 49.0 4.93e-01 86.0% 86.0%
3664504 142.1.1.3 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.63 51.0 3.77e-01 100.0% 34.8%
3933656 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 50.0 3.92e-01 98.0% 47.2%
3459967 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.62 49.0 3.97e-01 100.0% 45.8%
5067843 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.62 49.0 4.92e-01 90.0% 94.0%
3965373 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.61 53.0 4.77e-01 98.0% 80.0%
3280723 101.1.1.29 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.61 50.0 4.31e-01 100.0% 65.6%
4095134 109.4.1.109 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sel1 0.58 47.0 3.57e-01 92.0% 61.6%
3359 107.1.1.6 alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c › Dehyd-heme_bind 0.56 45.0 3.82e-01 90.0% 61.2%
5047185 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 48.0 3.56e-01 100.0% 70.9%
5083086 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 43.0 4.29e-01 100.0% 96.3%
3929142 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 39.0 3.78e-01 96.0% 76.7%