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KR063281.1__AKJ72595.1__GMA2_57__00057

Bact-Vir

KR063281.1__AKJ72595.1__GMA2_57__00057

Identity

Accession:
KR063281 ↗
Kingdom:
phage

Quality

73.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Gimaduovirus› Gordonia_phage_GMA2

TaxID: 1647283

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-112
PDB
Domain cluster: rep: NC_031927.1__YP_009323018.1__BOW86_gp085__00085__D3-79
D2 high residues 120-175
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lvhA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.67 51.0 5.59e-01 96.4% 100.0%
3tiiA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.60 43.0 4.16e-01 91.1% 67.7%
2zt5A02 3.30.40.230 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.55 37.0 3.36e-01 73.2% 100.0%
4l8jA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.55 44.0 3.90e-01 100.0% 96.8%
2hjhA02 3.30.1600.10 Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' 0.53 40.0 3.12e-01 82.1% 55.7%
5k9aA00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.53 42.0 3.01e-01 96.4% 61.9%
4eq3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 3.61e-01 98.2% 83.3%
2jvuA00 2.60.40.2290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 42.0 3.66e-01 96.4% 86.7%
2yuxA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 42.0 3.60e-01 100.0% 70.4%
2cs4A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 41.0 3.55e-01 92.9% 53.7%
4e6xB00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 40.0 2.65e-01 92.9% 87.4%
6hmjA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 35.0 3.02e-01 75.0% 54.3%
3eqvA02 3.30.450.330 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 37.0 2.96e-01 82.1% 48.1%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3686214 376.1.1.5 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.75 47.0 4.22e-01 92.9% 46.2%
3845539 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.73 51.0 4.35e-01 73.2% 60.0%
3772534 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.72 50.0 4.37e-01 73.2% 63.5%
3486285 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.69 48.0 4.36e-01 73.2% 58.7%
3675525 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.68 50.0 4.70e-01 94.6% 64.7%
4099366 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.65 44.0 3.10e-01 71.4% 23.2%
4106902 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.60 40.0 2.89e-01 71.4% 21.6%
4134159 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.59 41.0 2.96e-01 75.0% 98.4%
4100838 2006.1.3.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › DNA_gyraseB_C,Toprim 0.59 51.0 3.45e-01 100.0% 42.4%
3422331 263.1.1.0 ↗ a+b three layers › SRF-like › SRF-like › SRF-like 0.59 36.0 3.55e-01 80.4% 56.7%
4142507 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.58 39.0 2.80e-01 71.4% 21.0%
3715083 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.56 40.0 2.56e-01 80.4% 47.6%
4946420 376.1.1.180 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ResIII 0.55 42.0 4.05e-01 96.4% 73.8%
3171121 2496.1.1.2 ↗ a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › STAS 0.55 38.0 2.74e-01 73.2% 24.2%
4077806 1056.1.1.1 ↗ a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › TruD 0.55 38.0 2.63e-01 80.4% 20.5%
5012954 632.2.1.40 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF515 0.53 38.0 3.03e-01 83.9% 58.6%
3654794 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.52 38.0 2.24e-01 80.4% 17.5%
3164904 3008.1.1.0 ↗ a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.52 44.0 3.09e-01 100.0% 38.5%
4622447 1.1.1.7 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › tRNA-synt_1_2 0.52 42.0 3.02e-01 100.0% 37.5%
3164792 633.23.1.11 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PqiA 0.52 38.0 2.83e-01 82.1% 79.4%
3964444 601.1.2.89 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › PqiA 0.51 41.0 3.06e-01 92.9% 46.9%
4403519 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 37.0 2.75e-01 94.6% 27.1%
4267075 1.1.1.7 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › tRNA-synt_1_2 0.51 42.0 2.97e-01 98.2% 37.9%
4004118 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.50 40.0 2.85e-01 96.4% 27.6%
3730205 221.1.1.4 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.50 42.0 3.82e-01 100.0% 88.7%
4614587 1.1.1.7 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › tRNA-synt_1_2 0.50 42.0 2.96e-01 100.0% 37.1%