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KR072689.1__AKG94532.1__Shpa_21__00021

Bact-Vir

KR072689.1__AKG94532.1__Shpa_21__00021

Identity

Accession:
KR072689 ↗
Kingdom:
phage

Quality

89.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vhulanivirus› Paracoccus_phage_Shpa

TaxID: 1647282

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-73
PDB
Domain cluster: rep: KU935715.1__AND75263.1__ME3_102__00102__D2-71
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gf8A01 2.60.40.2100 Mainly Beta › Sandwich › Immunoglobulin-like › 0.66 47.0 3.67e-01 76.4% 41.8%
3r4rA01 2.60.40.2580 Mainly Beta › Sandwich › Immunoglobulin-like › 0.65 47.0 3.68e-01 75.0% 56.4%
3payC01 2.60.40.2100 Mainly Beta › Sandwich › Immunoglobulin-like › 0.65 46.0 3.53e-01 76.4% 41.4%
4qdgA01 2.60.40.2100 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 46.0 3.50e-01 75.0% 42.4%
3pjyA00 2.60.120.1140 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF192 0.63 49.0 3.99e-01 94.4% 46.5%
3b4vD01 3.90.290.10 Alpha Beta › Alpha-Beta Complex › Extracellular Matrix Fibrillin › TGF-beta binding (TB) domain 0.58 40.0 4.12e-01 73.6% 80.0%
4lrzE01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.58 34.0 2.52e-01 73.6% 23.6%
3irzA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 40.0 3.64e-01 73.6% 58.6%
3by9B01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 31.0 2.57e-01 91.7% 30.5%
1vw4U00 3.30.1390.20 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L30/L7 0.54 39.0 3.80e-01 79.2% 89.0%
1b04A01 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.51 36.0 2.99e-01 75.0% 99.2%
D2 high residues 79-176
PDB
Domain cluster: rep: KM199771.1__AIK68528.1__Lo5R7ANS_58__00058__D55-134
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4uz0A00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.66 44.0 4.70e-01 92.9% 77.0%
2n7zA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.57 40.0 3.96e-01 96.9% 67.0%
3kbbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.54 34.0 3.82e-01 84.7% 87.1%
3h0dB02 1.10.1200.150 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Transcriptional repressor of class III stress genes, C-terminal domain 0.54 37.0 4.09e-01 78.6% 86.4%
1mw9X02 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.54 38.0 3.25e-01 83.7% 44.8%
3qygB01 1.10.472.20 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Nitrile hydratase, beta subunit 0.53 39.0 3.74e-01 84.7% 64.4%
2y1eA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.51 30.0 3.16e-01 78.6% 63.2%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3521686 110.1.1.2 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD 0.63 41.0 4.29e-01 92.9% 72.2%
3908029 110.1.1.2 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD 0.59 41.0 4.23e-01 96.9% 75.3%
3903413 110.1.1.2 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD 0.58 44.0 4.41e-01 98.0% 79.0%
3814554 7579.1.1.5 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S10 0.52 46.0 2.99e-01 100.0% 65.7%
1276702 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.51 34.0 3.48e-01 84.7% 69.1%