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KR072689.1__AKG94557.1__Shpa_46__00046

Bact-Vir

KR072689.1__AKG94557.1__Shpa_46__00046

Identity

Accession:
KR072689 ↗
Kingdom:
phage

Quality

91.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-71
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1x0tA02 6.20.50.20 Special › Other non-globular › N-terminal domain of TfIIb › 0.64 41.0 4.79e-01 88.4% 100.0%
8ew8A01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.63 45.0 3.06e-01 73.9% 65.9%
3pijA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.63 43.0 3.40e-01 72.5% 70.5%
1jw9B00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.61 42.0 2.88e-01 72.5% 42.5%
7qryB01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.61 43.0 3.31e-01 73.9% 67.3%
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.60 42.0 3.00e-01 72.5% 43.2%
1zxuA00 2.40.160.200 Mainly Beta › Beta Barrel › Porin › LURP1-related 0.59 47.0 3.60e-01 87.0% 41.4%
4by2B00 2.60.450.20 Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › 0.58 48.0 3.64e-01 88.4% 51.6%
1pjxA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.58 43.0 2.82e-01 79.7% 30.6%
6igbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 44.0 2.79e-01 81.2% 27.3%
2ghsA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.58 43.0 2.82e-01 79.7% 27.8%
3kt9A00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.57 50.0 4.47e-01 100.0% 80.4%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.57 32.0 3.53e-01 89.9% 68.5%
3rm5B01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.57 42.0 2.75e-01 78.3% 42.4%
8f5pE01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 42.0 2.65e-01 79.7% 27.8%
3zuaA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.55 43.0 3.60e-01 88.4% 95.4%
2bzlA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.55 48.0 3.19e-01 98.6% 41.2%
4bs9A02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 40.0 2.93e-01 79.7% 68.8%
2erfA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 41.0 2.99e-01 82.6% 44.0%
4g2sA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.54 48.0 4.20e-01 100.0% 84.9%
3pihA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.54 47.0 4.67e-01 97.1% 98.6%
1l0qA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 44.0 2.87e-01 100.0% 21.3%
1wu7A03 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.52 38.0 3.51e-01 81.2% 90.7%
1nj1A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.52 38.0 3.43e-01 81.2% 89.4%
1atiB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.52 38.0 3.34e-01 81.2% 86.6%
2i4lB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.52 38.0 3.45e-01 81.2% 87.1%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 38.0 2.56e-01 81.2% 25.7%
4hdoA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 43.0 3.97e-01 95.7% 76.1%
7rpyA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 40.0 3.57e-01 89.9% 98.1%
2wfbA00 3.30.420.130 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Dinitrogenase iron-molybdenum cofactor biosynthesis domain 0.50 39.0 3.39e-01 89.9% 71.7%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3825916 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.77 68.0 6.85e-01 98.6% 95.7%
3378783 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.75 66.0 6.66e-01 97.1% 95.7%
3190113 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.66 46.0 2.91e-01 71.0% 26.9%
4036210 220.1.1.36 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.65 46.0 3.26e-01 73.9% 47.8%
None 0.63 46.0 3.37e-01 76.8% 30.6%
4943339 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 43.0 3.78e-01 94.2% 49.0%
3729161 375.1.1.31 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.61 43.0 3.98e-01 73.9% 64.4%
3932430 375.1.1.31 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.61 43.0 4.33e-01 73.9% 82.9%
3512402 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.61 47.0 2.98e-01 81.2% 25.5%
4026416 375.1.1.31 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.60 42.0 4.15e-01 73.9% 73.3%
3415744 5.1.4.420 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_Aladin 0.60 45.0 2.79e-01 79.7% 19.5%
3798357 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 42.0 4.14e-01 73.9% 77.3%
3211396 5.1.4.167 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR19_1st 0.59 43.0 2.73e-01 76.8% 20.6%
3902222 5.1.2.2 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › WD40 0.59 43.0 3.24e-01 78.3% 61.8%
3549725 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.58 44.0 2.69e-01 79.7% 18.8%
3643107 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.58 44.0 2.71e-01 79.7% 19.6%
3593872 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.58 42.0 3.35e-01 76.8% 83.6%
4146735 219.1.1.159 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6005 0.58 40.0 3.05e-01 72.5% 40.6%
3979051 5.1.3.23 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL 0.57 43.0 2.88e-01 81.2% 28.8%
3966121 5.1.5.9 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Cytochrom_D1 0.57 43.0 2.68e-01 81.2% 21.0%
3849084 5.1.11.11 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › WD40 0.57 48.0 2.88e-01 100.0% 14.3%
3755410 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.56 48.0 2.86e-01 100.0% 14.2%
5066047 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.56 48.0 3.52e-01 97.1% 77.3%
4930179 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 36.0 3.92e-01 100.0% 81.8%
4927809 5.1.4.35 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.56 42.0 2.72e-01 81.2% 24.3%
3670446 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 42.0 2.75e-01 82.6% 20.9%
5062957 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.55 44.0 3.51e-01 85.5% 100.0%
3714545 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 44.0 2.78e-01 87.0% 59.1%
4929258 5.1.4.163 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Vgb_lyase 0.55 41.0 2.69e-01 81.2% 25.1%
4957405 5.1.4.163 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Vgb_lyase 0.53 39.0 2.60e-01 79.7% 24.8%
3222419 331.23.1.0 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.53 43.0 4.22e-01 100.0% 86.7%
None 0.52 45.0 2.93e-01 97.1% 91.1%
3216882 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 45.0 2.86e-01 97.1% 90.8%
3677142 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.51 43.0 2.88e-01 100.0% 38.2%
4966534 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 33.0 3.62e-01 98.6% 92.0%
3441598 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.51 42.0 2.89e-01 100.0% 36.1%
3453930 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 46.0 3.03e-01 100.0% 30.2%
3383213 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.51 42.0 2.84e-01 98.6% 33.1%
3702514 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.51 44.0 2.66e-01 95.7% 90.3%
3934636 5.1.5.102 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › OLF 0.50 42.0 2.94e-01 100.0% 86.4%
3235272 5.1.3.9 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › OLF 0.50 41.0 2.89e-01 100.0% 37.1%
3641403 5.1.3.65 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.50 41.0 2.91e-01 98.6% 33.8%
3178511 2003.1.4.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › DHS-like NAD/FAD-binding domain › TPP_enzyme_M 0.50 43.0 3.20e-01 94.2% 74.4%
3831707 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.50 41.0 2.71e-01 98.6% 39.2%
3927304 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.50 44.0 2.74e-01 97.1% 87.6%
D2 medium residues 117-300
PDB
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1a8uA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.61 45.0 3.92e-01 76.6% 98.2%
1eucB03 3.40.50.261 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains 0.58 42.0 4.71e-01 75.5% 97.9%
1wcwA01 3.40.50.10090 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 33.0 3.90e-01 100.0% 87.2%
1eucA02 3.40.50.261 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains 0.54 41.0 4.26e-01 77.7% 97.6%
4toiA01 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.52 30.0 3.11e-01 100.0% 56.2%
3qitB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 46.0 3.94e-01 96.2% 99.3%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4305698 2006.1.3.6 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 0.70 46.0 5.55e-01 72.8% 98.4%
5053073 7522.1.1.0 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like 0.70 40.0 5.12e-01 76.6% 96.3%
5023468 7522.1.1.4 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › PFOR_II 0.69 40.0 5.05e-01 72.3% 98.1%
3837934 2006.1.3.6 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 0.69 45.0 5.44e-01 72.3% 97.6%
1407540 2006.1.3.6 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 0.68 44.0 5.32e-01 72.8% 97.6%
4504313 2006.1.3.6 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 0.67 44.0 5.24e-01 72.3% 96.8%
4968818 7522.1.1.4 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › PFOR_II 0.65 40.0 4.77e-01 71.7% 91.7%
5046909 7522.1.1.0 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like 0.64 40.0 4.73e-01 71.7% 90.4%
4937007 7522.1.1.1 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › Transketolase_C 0.64 44.0 5.13e-01 71.7% 97.7%
4250945 7522.1.1.1 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › Transketolase_C 0.64 47.0 5.32e-01 97.8% 98.6%
4990562 7522.1.1.1 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › Transketolase_C 0.63 45.0 5.09e-01 95.1% 96.4%
4275547 7522.1.1.0 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like 0.63 43.0 5.05e-01 77.2% 98.5%
4030959 7522.1.1.4 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › PFOR_II 0.63 40.0 4.82e-01 75.0% 98.3%
5041357 7522.1.1.1 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › Transketolase_C 0.62 43.0 4.98e-01 76.6% 96.3%
4352329 7522.1.1.1 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › Transketolase_C 0.62 44.0 5.00e-01 94.6% 96.4%
10343 7522.1.1.5 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › Transketolase_C_1 0.60 41.0 4.58e-01 95.1% 87.0%
4941954 7522.1.1.1 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › Transketolase_C 0.60 42.0 4.54e-01 72.3% 82.5%
3953569 7522.1.1.1 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › Transketolase_C 0.60 43.0 4.86e-01 76.1% 95.7%
5060027 7522.1.1.6 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › PF30897 0.60 39.0 4.46e-01 76.6% 87.4%
1281654 7579.1.1.44 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6 0.59 47.0 3.83e-01 82.1% 95.4%
3595935 7522.1.1.0 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like 0.56 39.0 4.55e-01 71.2% 100.0%
4029893 7522.1.1.3 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › OxoGdeHyase_C 0.56 40.0 4.24e-01 71.7% 91.9%
3960446 7522.1.1.0 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like 0.56 41.0 4.57e-01 76.1% 97.2%
1308391 7522.1.1.3 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › OxoGdeHyase_C 0.56 44.0 4.55e-01 100.0% 89.0%
4991427 2007.1.8.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Uroporphyrinogen III synthase (U3S, HemD) › HEM4 0.55 35.0 4.04e-01 100.0% 89.8%
4945552 7512.1.1.3 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.53 39.0 3.96e-01 75.5% 78.4%
4980310 2007.3.1.0 a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains 0.53 40.0 4.18e-01 77.7% 93.9%
4970052 2007.3.1.3 a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains › Succ_CoA_lig 0.52 38.0 3.93e-01 74.5% 83.4%