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KR073661.1AKH49371.1pro483_11__00011

Bact-Vir

KR073661.1__AKH49371.1__pro483_11__00011

Identity

Accession:: KR073661 ↗
Kingdom:: phage

Quality

94.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Peduoviridae› Peduovirus› Escherichia_phage_pro483

TaxID: 1649240

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 109-177

PDB

Domain cluster: representative

CATH (19)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3eoqB02	3.30.830.10	Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like	0.66	50.0	3.73e-01	97.1%	31.7%
3hdiA02	3.30.830.10	Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like	0.65	50.0	3.61e-01	97.1%	29.3%
2yksA02	1.20.58.390	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain	0.64	48.0	3.99e-01	98.6%	47.0%
2oyhA00	1.20.5.50	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.63	44.0	4.60e-01	94.2%	78.1%
6vynC01	1.10.225.10	Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like	0.61	48.0	4.75e-01	89.9%	100.0%
1vf7A03	1.10.287.470	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.60	44.0	4.66e-01	98.6%	86.7%
2avuB00	1.10.4000.10	Mainly Alpha › Orthogonal Bundle › Flagellar transcriptional activator fold › Flagellar transcriptional activator FlhD	0.57	47.0	4.19e-01	100.0%	61.5%
1sumB01	1.20.58.220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2	0.56	44.0	3.86e-01	94.2%	56.1%
3r7tA02	1.10.300.10	Mainly Alpha › Orthogonal Bundle › Adenylosuccinate Synthetase, subunit A; domain 2 › Adenylosuccinate Synthetase, subunit A, domain 2	0.55	40.0	3.73e-01	78.3%	96.7%
2p4vA01	1.10.287.180	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain	0.55	39.0	3.79e-01	98.6%	67.1%
2qkwA00	1.20.1270.140	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AvrPto	0.54	42.0	3.69e-01	94.2%	56.4%
1e7lA02	1.10.720.10	Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 ›	0.54	40.0	4.30e-01	88.4%	100.0%
7bqiA01	1.20.58.900	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain	0.54	40.0	3.14e-01	79.7%	97.4%
4i59A03	1.10.405.10	Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1	0.53	44.0	4.02e-01	91.3%	100.0%
2lw1A00	1.10.287.380	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain	0.53	42.0	3.95e-01	97.1%	69.4%
2ycdA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.52	40.0	3.33e-01	81.2%	54.7%
3lewA01	1.25.40.390	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.52	42.0	2.81e-01	94.2%	26.7%
2xvtC00	1.10.150.510	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Receptor activity modifying family	0.52	34.0	3.31e-01	98.6%	58.2%
5lohA02	1.10.510.10	Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1	0.50	43.0	3.27e-01	97.1%	51.1%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3231843	198.1.1.0 ↗	alpha arrays › Saposin-like › Saposin-like › Saposin-like	0.68	54.0	5.30e-01	88.4%	98.7%
3239011	198.1.1.1 ↗	alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2	0.67	53.0	5.19e-01	87.0%	97.3%
5064035	4009.1.1.0 ↗	alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins	0.62	37.0	3.94e-01	91.3%	68.3%
3495314	198.1.1.0 ↗	alpha arrays › Saposin-like › Saposin-like › Saposin-like	0.60	48.0	4.61e-01	89.9%	93.8%
3701017	192.15.1.0 ↗	alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains	0.59	45.0	4.02e-01	87.0%	58.9%
4955004	4009.1.1.0 ↗	alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins	0.58	36.0	3.82e-01	97.1%	71.7%
3995752	198.1.1.1 ↗	alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2	0.58	45.0	4.33e-01	91.3%	91.8%
3691091	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.56	41.0	3.28e-01	81.2%	40.8%
3478267	3812.1.1.0 ↗	alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE	0.55	42.0	4.13e-01	94.2%	74.7%
4189431	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.55	35.0	3.84e-01	72.5%	81.8%
3613985	102.5.1.0 ↗	alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins	0.52	39.0	3.69e-01	82.6%	100.0%
3967759	160.1.1.3 ↗	alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › T3SS_ATPase_C	0.51	41.0	4.01e-01	88.4%	96.0%
3927235	632.7.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain	0.51	37.0	3.73e-01	94.2%	80.0%

D2 medium residues 1-103

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF14022.12 best	DUF4238	65.8	5.90e-18	95.2%	35.2%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1yw5A01	2.20.70.10	Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; ›	0.51	29.0	3.54e-01	90.3%	88.9%
2zcmA00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.51	42.0	3.61e-01	93.2%	60.8%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3984734	3433.1.1.1 ↗	a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Plasmid-encoded ParB dimerization domain › ParB	0.58	24.0	3.36e-01	71.8%	78.0%
4966687	192.3.1.1 ↗	alpha bundles › Long alpha-hairpin › Fe,Mn superoxide dismutase (SOD), N-terminal domain › Fe,Mn superoxide dismutase (SOD), N-terminal domain › Sod_Fe_N	0.55	39.0	4.23e-01	82.5%	89.4%
4141047	593.1.1.0 ↗	alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like	0.53	42.0	3.19e-01	87.4%	71.5%
3174487	2498.5.1.0 ↗	mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like	0.52	42.0	2.93e-01	87.4%	79.2%
3508839	298.1.1.24 ↗	a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3	0.52	43.0	3.33e-01	90.3%	99.1%

D3 medium residues 178-309

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF14022.12 best	DUF4238	49.2	7.00e-13	86.4%	39.8%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3946137	10.32.1.0 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like	0.51	26.0	3.08e-01	80.3%	72.5%