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KR080193.1__AKF14244.1__SEA_LUCHADOR_80__00079

Bact-Vir

KR080193.1__AKF14244.1__SEA_LUCHADOR_80__00079

Identity

Accession:
KR080193 ↗
Kingdom:
phage

Quality

76.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-78
PDB
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1jx4A04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.72 63.0 5.12e-01 96.3% 93.9%
1wx9A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.70 52.0 4.49e-01 81.5% 76.7%
2qsdB02 3.50.100.10 Alpha Beta › 3-Layer(bba) Sandwich › protein il1583 fold › protein il1583 domain 0.69 57.0 5.00e-01 100.0% 62.8%
1cc8A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 50.0 4.60e-01 79.6% 98.6%
3bh1A03 3.40.140.40 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Domain of unknown function (DUF1846), C-terminal subdomain 0.66 49.0 3.75e-01 87.0% 78.1%
4a4yA01 2.60.200.50 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.65 48.0 3.97e-01 79.6% 95.9%
2eenA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.64 44.0 3.12e-01 72.2% 94.9%
5mj6A03 2.60.40.1910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 44.0 3.91e-01 77.8% 48.8%
2n17A00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.64 44.0 4.39e-01 77.8% 69.6%
4gi3C00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.64 44.0 4.40e-01 79.6% 70.2%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.63 52.0 4.25e-01 98.1% 84.7%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.63 51.0 4.29e-01 92.6% 64.6%
1wmhA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.62 44.0 3.88e-01 75.9% 92.8%
1u3eM02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 45.0 4.24e-01 79.6% 79.4%
2j4xA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.61 44.0 3.46e-01 77.8% 79.0%
3mb5A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.61 44.0 4.23e-01 77.8% 91.9%
1wi0A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.61 43.0 3.49e-01 77.8% 77.9%
2bkfA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.60 43.0 3.82e-01 77.8% 91.6%
1wbaA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.60 48.0 3.37e-01 100.0% 28.1%
4gxbA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.59 48.0 3.98e-01 90.7% 90.7%
2l6oA01 2.40.10.320 Mainly Beta › Beta Barrel › Thrombin, subunit H › Uncharacterised protein PF13642 yp_926445, N-terminal domain 0.58 42.0 3.86e-01 87.0% 58.3%
4uzgA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 48.0 3.47e-01 94.4% 41.7%
3glkA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.57 39.0 3.88e-01 72.2% 69.5%
2piaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 45.0 3.76e-01 90.7% 62.5%
6vtmB00 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.57 48.0 3.99e-01 92.6% 87.5%
2odpA03 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 46.0 3.33e-01 92.6% 49.1%
1pqsA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 39.0 3.55e-01 75.9% 53.2%
7bjkA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.55 38.0 3.20e-01 87.0% 37.2%
2zylA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.55 42.0 3.19e-01 85.2% 58.5%
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.55 39.0 2.80e-01 77.8% 65.9%
4limA00 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.55 43.0 2.73e-01 100.0% 74.5%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.54 44.0 3.23e-01 96.3% 88.0%
4bpuC00 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.54 43.0 2.72e-01 100.0% 75.7%
6imjA01 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.54 42.0 3.02e-01 92.6% 81.9%
1txkA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 42.0 2.59e-01 90.7% 40.2%
3loiA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 44.0 3.19e-01 94.4% 40.0%
3ne5B01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.53 42.0 3.69e-01 90.7% 59.3%
3m4aA03 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.53 35.0 2.82e-01 88.9% 32.2%
6b9tF01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 43.0 3.34e-01 92.6% 52.0%
3gkeA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.52 40.0 3.09e-01 85.2% 59.2%
2qmiA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 39.0 2.46e-01 87.0% 84.4%
2f1eA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.52 43.0 3.37e-01 92.6% 79.3%
6z9cA01 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.52 42.0 3.32e-01 92.6% 74.6%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 36.0 2.94e-01 72.2% 90.5%
4geqB00 3.30.160.430 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 35.0 3.49e-01 81.5% 67.2%
2z8lA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.51 42.0 3.33e-01 92.6% 74.4%
3deeA02 3.90.930.50 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.51 38.0 3.09e-01 83.3% 74.6%
1vw3C01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 42.0 3.32e-01 100.0% 69.5%
1lktA00 2.170.14.10 Mainly Beta › Beta Complex › Tailspike Protein; Chain › Phage P22 tailspike-like, N-terminal domain 0.51 42.0 3.44e-01 94.4% 49.0%
2eixA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 38.0 3.29e-01 92.6% 93.4%
2d93A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 36.0 2.76e-01 77.8% 30.6%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.51 38.0 3.53e-01 87.0% 84.2%
6hoxA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 39.0 2.73e-01 96.3% 39.7%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4463006 3115.2.1.0 a+b two layers › GP2-like › GP2 › GP2 0.88 62.0 6.72e-01 74.1% 100.0%
5014007 3115.2.1.0 a+b two layers › GP2-like › GP2 › GP2 0.80 60.0 5.96e-01 79.6% 89.1%
3969006 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.80 56.0 6.03e-01 74.1% 95.6%
4443054 3115.1.1.9 a+b two layers › GP2-like › RplX-like › RplX-like › YjeJ 0.71 53.0 4.15e-01 81.5% 55.8%
5083269 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.69 53.0 3.87e-01 87.0% 77.5%
5053740 12.6.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related 0.64 49.0 3.86e-01 90.7% 40.4%
3502158 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.64 52.0 3.81e-01 92.6% 72.3%
4017638 221.1.1.4 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.64 46.0 3.73e-01 77.8% 84.5%
5078886 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.63 46.0 3.60e-01 77.8% 39.1%
3781 4967.1.1.0 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.62 51.0 3.59e-01 96.3% 63.2%
3400735 379.1.1.3 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 0.62 45.0 4.51e-01 79.6% 76.4%
3938900 3346.1.1.5 a+b two layers › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › ODR4-like 0.62 49.0 3.47e-01 90.7% 54.1%
3847628 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.61 45.0 3.81e-01 81.5% 76.8%
3715676 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 51.0 4.33e-01 94.4% 85.6%
3400462 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.61 45.0 4.43e-01 79.6% 75.9%
3553026 221.1.1.4 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.61 45.0 3.79e-01 79.6% 81.1%
3958893 1077.1.1.0 few secondary structure elements › RelA zinc-finger domain › RelA zinc-finger domain › RelA zinc-finger domain 0.60 40.0 4.12e-01 100.0% 74.0%
3666940 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.60 50.0 3.98e-01 98.1% 63.3%
3618723 221.1.1.4 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.59 42.0 3.81e-01 77.8% 92.5%
3734369 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.59 43.0 2.69e-01 77.8% 14.8%
5001166 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.59 50.0 3.83e-01 100.0% 48.9%
4069807 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.59 47.0 3.91e-01 90.7% 61.0%
3763290 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.59 48.0 3.67e-01 92.6% 60.8%
3941676 1077.1.1.1 few secondary structure elements › RelA zinc-finger domain › RelA zinc-finger domain › RelA zinc-finger domain › RelA_RIS 0.58 39.0 3.61e-01 100.0% 54.3%
4006572 171.1.1.12 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › PF28438 0.57 39.0 3.71e-01 100.0% 58.5%
1392732 221.1.1.4 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.57 43.0 3.45e-01 83.3% 75.7%
3163907 221.1.1.220 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PF28438 0.57 39.0 3.59e-01 100.0% 54.3%
3653231 11.1.1.652 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ribophorin_II_3rd 0.57 46.0 3.49e-01 92.6% 77.1%
2559800 12.6.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related 0.57 47.0 3.70e-01 90.7% 53.2%
4662939 1077.1.1.1 few secondary structure elements › RelA zinc-finger domain › RelA zinc-finger domain › RelA zinc-finger domain › RelA_RIS 0.57 39.0 3.60e-01 100.0% 54.3%
3973332 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 45.0 4.13e-01 90.7% 92.0%
150973 4967.1.1.5 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › RdRP_3 0.57 45.0 3.14e-01 96.3% 58.3%
3996365 11.1.1.298 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Integrin_A_Ig_3 0.56 46.0 3.08e-01 92.6% 55.4%
3226828 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.56 45.0 3.58e-01 94.4% 60.0%
3781956 4099.1.1.3 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spc24 0.56 39.0 3.53e-01 74.1% 78.7%
3475431 133.1.1.0 alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) 0.56 46.0 3.01e-01 92.6% 42.1%
4306152 148.1.3.203 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF28760 0.56 48.0 3.51e-01 100.0% 65.8%
None 0.55 44.0 2.53e-01 90.7% 9.2%
3964188 1.1.7.80 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RND-MFP_C 0.55 44.0 3.99e-01 90.7% 68.0%
4156870 221.1.1.4 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.55 39.0 3.39e-01 77.8% 82.1%
3263394 11.1.1.843 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.55 44.0 3.42e-01 92.6% 73.1%
3173409 221.1.1.4 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.55 46.0 3.86e-01 100.0% 95.2%
3967695 221.1.1.1 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Fer2 0.55 42.0 3.73e-01 90.7% 57.5%
3636403 4001.1.1.4 a+b duplicates or obligate multimers › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › Cullin_AB 0.54 40.0 3.09e-01 81.5% 53.8%
3987692 822.3.1.1 a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 › DUF4649 0.54 40.0 3.80e-01 83.3% 64.3%
3687350 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 36.0 3.61e-01 70.4% 90.9%
3231308 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.54 38.0 2.61e-01 94.4% 18.7%
4854042 12.3.1.10 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › MdoG 0.53 43.0 2.61e-01 90.7% 40.7%
3344184 11.1.1.652 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ribophorin_II_3rd 0.53 42.0 3.20e-01 94.4% 35.9%
3926189 101.1.1.76 alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.52 36.0 3.06e-01 74.1% 69.0%
3926235 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.52 42.0 3.74e-01 90.7% 87.5%
3927687 101.1.1.76 alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.52 35.0 3.08e-01 72.2% 71.6%
3262643 11.1.1.843 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.52 40.0 3.25e-01 94.4% 45.6%
3971840 101.1.2.379 alpha arrays › HTH › HTH › winged helix domain › NGO1945_C 0.51 39.0 3.15e-01 87.0% 79.1%
3963302 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.51 43.0 3.53e-01 98.1% 89.5%
224066 822.3.1.1 a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 › DUF4649 0.51 39.0 3.58e-01 98.1% 62.3%
2418726 2010.1.1.1 a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV 0.51 39.0 2.85e-01 87.0% 36.3%
3970435 101.1.2.379 alpha arrays › HTH › HTH › winged helix domain › NGO1945_C 0.50 39.0 3.14e-01 88.9% 80.7%