←Back to structures
KR080198.1__AKF14538.1__SEA_CAMBIARE_36__00036
Bact-VirKR080198.1__AKF14538.1__SEA_CAMBIARE_36__00036
Identity
- Accession:
- KR080198 ↗
- Kingdom:
- phage
Quality
93.4
mean pLDDT
Taxonomy
TaxID: 1647305
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-89
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3c24A02 | 1.10.3640.10 | Mainly Alpha › Orthogonal Bundle › putative oxidoreductase fold › Semialdehyde dehydrogenase-like, C-terminal | 0.78 | 52.0 | 4.90e-01 | 84.1% | 57.0% |
| 2it9A00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.76 | 53.0 | 4.62e-01 | 91.5% | 49.2% |
| 3otdA00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.73 | 65.0 | 4.51e-01 | 95.1% | 66.7% |
| 2nvnA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.72 | 50.0 | 4.41e-01 | 91.5% | 49.2% |
| 4h63K00 | 1.10.287.3490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.69 | 41.0 | 3.83e-01 | 76.8% | 49.0% |
| 2zdiB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.69 | 50.0 | 4.57e-01 | 75.6% | 59.4% |
| 3lxrF00 | 1.10.4120.20 | Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › | 0.68 | 45.0 | 3.49e-01 | 98.8% | 30.4% |
| 6ynwH01 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.68 | 46.0 | 4.82e-01 | 80.5% | 77.0% |
| 5axmB00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.66 | 58.0 | 4.07e-01 | 95.1% | 63.2% |
| 1fxkB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.65 | 48.0 | 4.34e-01 | 76.8% | 64.2% |
| 1zymA02 | 1.10.274.10 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › PtsI, HPr-binding domain | 0.60 | 46.0 | 3.99e-01 | 100.0% | 54.0% |
| 6gy8A01 | 1.20.1170.10 | Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › | 0.53 | 46.0 | 3.06e-01 | 97.6% | 46.1% |
| 4l0mA00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.51 | 38.0 | 2.74e-01 | 79.3% | 89.0% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3594965 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.66 | 47.0 | 3.93e-01 | 75.6% | 45.0% |
| 4386701 | 310.2.1.35 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › PF28954 | 0.65 | 46.0 | 3.77e-01 | 74.4% | 42.8% |
| 3176989 | 601.19.1.40 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › PF28954 | 0.63 | 46.0 | 3.63e-01 | 75.6% | 41.2% |
| 4995140 | 2484.1.1.124 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 | 0.63 | 43.0 | 3.59e-01 | 92.7% | 40.0% |
| 4950752 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.63 | 53.0 | 3.44e-01 | 92.7% | 38.4% |
| 3920672 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.62 | 44.0 | 4.31e-01 | 73.2% | 77.8% |
| 4618205 | 604.1.1.150 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF28954 | 0.62 | 43.0 | 3.78e-01 | 72.0% | 57.5% |
| 3591633 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.60 | 56.0 | 5.00e-01 | 100.0% | 84.5% |
| 3714703 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.59 | 52.0 | 4.91e-01 | 96.3% | 81.0% |
| 3921576 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.59 | 39.0 | 3.27e-01 | 84.1% | 40.0% |
| 4129936 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.56 | 39.0 | 3.72e-01 | 72.0% | 61.1% |
| 5039400 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.54 | 43.0 | 2.92e-01 | 86.6% | 61.3% |
| 3577264 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.52 | 36.0 | 3.03e-01 | 72.0% | 87.3% |
| 3603591 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 37.0 | 2.46e-01 | 74.4% | 48.3% |
| 3664655 | 601.28.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like › PHD_Oberon | 0.52 | 44.0 | 3.59e-01 | 92.7% | 68.7% |
| 3376913 | 2.1.1.28 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › mRNA_cap_C | 0.52 | 37.0 | 3.45e-01 | 78.0% | 93.6% |