←Back to structures
KR080199.1__AKF14641.1__SEA_BAEE_72__00072
Bact-VirKR080199.1__AKF14641.1__SEA_BAEE_72__00072
Identity
- Accession:
- KR080199 ↗
- Kingdom:
- phage
Quality
59.6
mean pLDDT
Taxonomy
TaxID: 1647306
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 18-117
Domain cluster:
rep: KT880194.1__AMB17382.1__SEA_GLASS_68__00068__D76-197
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3lnlB02 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.68 | 41.0 | 4.35e-01 | 90.0% | 68.2% |
| 5ajiB03 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.66 | 45.0 | 4.64e-01 | 94.0% | 73.7% |
| 4dmzA02 | 3.30.70.2880 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 40.0 | 3.58e-01 | 92.0% | 43.8% |
| 7dluA03 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 42.0 | 4.66e-01 | 92.0% | 83.5% |
| 2fmaA00 | 3.30.1490.140 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Amyloidogenic glycoprotein, copper-binding domain | 0.64 | 37.0 | 4.56e-01 | 84.0% | 96.6% |
| 6h8oA00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.64 | 34.0 | 3.51e-01 | 92.0% | 52.6% |
| 4ushA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 39.0 | 3.94e-01 | 93.0% | 59.2% |
| 3onrJ00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.63 | 41.0 | 4.69e-01 | 93.0% | 97.1% |
| 3udcA03 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 44.0 | 4.72e-01 | 92.0% | 84.1% |
| 6x4tA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 38.0 | 4.06e-01 | 88.0% | 70.6% |
| 4dn9B00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 38.0 | 3.87e-01 | 92.0% | 64.9% |
| 2bkyX00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.60 | 36.0 | 3.88e-01 | 84.0% | 69.8% |
| 3c6kB03 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 36.0 | 2.95e-01 | 86.0% | 31.6% |
| 3pm9A04 | 3.30.70.2740 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 38.0 | 4.04e-01 | 91.0% | 77.0% |
| 1j27A00 | 3.30.70.1120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › TT1725-like | 0.58 | 40.0 | 4.04e-01 | 94.0% | 72.4% |
| 1y14D01 | 3.30.1490.120 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase Rpb7-like, N-terminal domain | 0.55 | 38.0 | 4.20e-01 | 97.0% | 95.9% |
| 3icaB00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.55 | 43.0 | 3.43e-01 | 85.0% | 47.6% |
| 3bguA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 37.0 | 3.77e-01 | 91.0% | 71.9% |
| 2ab5B01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.54 | 42.0 | 3.87e-01 | 99.0% | 64.1% |
| 2ogkD00 | 3.30.1440.10 | Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 | 0.53 | 48.0 | 4.25e-01 | 99.0% | 97.9% |
| 7d58G01 | 3.30.1490.120 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase Rpb7-like, N-terminal domain | 0.53 | 36.0 | 4.04e-01 | 84.0% | 96.0% |
| 3bm7A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 35.0 | 3.53e-01 | 93.0% | 65.1% |
| 3mjgX03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 42.0 | 4.28e-01 | 97.0% | 85.1% |
| 1cl7I00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 39.0 | 4.20e-01 | 96.0% | 96.3% |
| 2e9wA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 41.0 | 4.13e-01 | 97.0% | 83.3% |
| 2nrqA00 | 3.30.1440.10 | Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 | 0.52 | 45.0 | 4.06e-01 | 97.0% | 93.4% |
| 4of8A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 41.0 | 4.14e-01 | 98.0% | 85.4% |
| 4ofyD02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 41.0 | 4.05e-01 | 96.0% | 80.4% |
| 2zxqA01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.51 | 41.0 | 3.03e-01 | 90.0% | 87.3% |
| 1g84A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 40.0 | 3.96e-01 | 95.0% | 81.0% |
| 4i0kA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 38.0 | 3.95e-01 | 93.0% | 86.3% |
| 2wyhA05 | 2.60.40.2210 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 42.0 | 3.88e-01 | 92.0% | 73.1% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3999424 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.66 | 44.0 | 4.30e-01 | 93.0% | 61.8% |
| 5054426 | 304.39.1.1 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd | 0.65 | 44.0 | 4.43e-01 | 94.0% | 69.0% |
| 3842044 | 11.1.1.108 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 | 0.65 | 40.0 | 3.83e-01 | 89.0% | 51.7% |
| 3969704 | 304.39.1.1 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd | 0.65 | 43.0 | 4.35e-01 | 92.0% | 68.0% |
| 4966003 | 304.39.1.1 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd | 0.65 | 44.0 | 4.37e-01 | 95.0% | 66.7% |
| 4981037 | 304.39.1.1 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd | 0.64 | 43.0 | 4.49e-01 | 93.0% | 75.6% |
| 3531830 | 11.1.1.363 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_3 | 0.64 | 40.0 | 3.90e-01 | 89.0% | 56.4% |
| 5029187 | 304.39.1.1 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd | 0.64 | 44.0 | 4.76e-01 | 97.0% | 86.7% |
| 5035880 | 256.1.1.0 ↗ | a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like | 0.63 | 38.0 | 4.67e-01 | 83.0% | 100.0% |
| 4182510 | 812.1.1.1 ↗ | a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain › MinE | 0.63 | 45.0 | 4.69e-01 | 88.0% | 82.2% |
| 3365211 | 304.39.1.2 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Msl2-3_C | 0.63 | 44.0 | 4.93e-01 | 86.0% | 97.3% |
| 3602951 | 304.39.1.1 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd | 0.63 | 44.0 | 4.36e-01 | 94.0% | 69.5% |
| 4951181 | 304.39.1.1 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd | 0.62 | 42.0 | 4.29e-01 | 94.0% | 70.0% |
| 3973044 | 304.39.1.0 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain | 0.62 | 42.0 | 4.24e-01 | 93.0% | 69.0% |
| 3590830 | 304.39.1.0 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain | 0.62 | 43.0 | 4.41e-01 | 92.0% | 75.8% |
| 4996724 | 304.39.1.1 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd | 0.61 | 41.0 | 4.25e-01 | 93.0% | 72.6% |
| 3268232 | 304.109.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e | 0.61 | 42.0 | 3.94e-01 | 85.0% | 58.3% |
| 5014488 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.61 | 40.0 | 3.63e-01 | 92.0% | 48.9% |
| 3307617 | 304.39.1.0 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain | 0.61 | 44.0 | 4.32e-01 | 97.0% | 69.1% |
| 5049353 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.61 | 46.0 | 4.31e-01 | 100.0% | 64.8% |
| 3827396 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 44.0 | 4.33e-01 | 94.0% | 70.9% |
| 3306490 | 304.39.1.0 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain | 0.60 | 44.0 | 4.33e-01 | 94.0% | 70.9% |
| 4328537 | 812.1.1.1 ↗ | a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain › MinE | 0.60 | 41.0 | 4.43e-01 | 91.0% | 84.7% |
| 3615945 | 304.18.1.1 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB | 0.60 | 43.0 | 4.46e-01 | 93.0% | 80.9% |
| 1505699 | 812.1.1.1 ↗ | a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain › MinE | 0.59 | 40.0 | 4.24e-01 | 88.0% | 80.5% |
| 5038341 | 304.39.1.1 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd | 0.59 | 41.0 | 4.12e-01 | 93.0% | 70.5% |
| 4019555 | 304.39.1.0 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain | 0.59 | 43.0 | 4.21e-01 | 94.0% | 70.9% |
| 3340180 | 304.39.1.0 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain | 0.58 | 42.0 | 4.21e-01 | 96.0% | 75.0% |
| 4026677 | 304.39.1.0 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain | 0.58 | 42.0 | 4.29e-01 | 93.0% | 77.0% |
| 4004010 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.58 | 41.0 | 4.43e-01 | 93.0% | 92.5% |
| 4221721 | 4956.1.1.0 ↗ | a+b two layers › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.57 | 35.0 | 3.93e-01 | 92.0% | 82.7% |
| 4088643 | 304.18.1.1 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB | 0.56 | 43.0 | 4.25e-01 | 92.0% | 77.1% |
| 3191800 | 871.1.1.1 ↗ | a+b two layers › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › TYW3 | 0.56 | 47.0 | 3.69e-01 | 93.0% | 56.0% |
| 4932565 | 305.1.1.1 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L | 0.56 | 34.0 | 3.59e-01 | 90.0% | 66.7% |
| 3298960 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.56 | 37.0 | 4.18e-01 | 84.0% | 98.6% |
| 3862727 | 11.1.1.3 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig | 0.55 | 44.0 | 4.40e-01 | 98.0% | 81.9% |
| 4960709 | 882.1.1.4 ↗ | a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding | 0.55 | 49.0 | 4.36e-01 | 98.0% | 96.4% |
| 3903569 | 11.1.1.363 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_3 | 0.53 | 41.0 | 4.12e-01 | 92.0% | 81.0% |
| 3434184 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.53 | 37.0 | 3.54e-01 | 72.0% | 81.6% |
| 4976045 | 304.57.1.1 ↗ | a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › RNase_P_Rpp14 | 0.53 | 35.0 | 3.42e-01 | 88.0% | 60.9% |
| 3938171 | 11.1.1.3 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig | 0.53 | 42.0 | 4.19e-01 | 93.0% | 81.9% |
| 3778889 | 11.1.1.108 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 | 0.51 | 42.0 | 3.81e-01 | 100.0% | 64.3% |
| 3859511 | 11.1.1.363 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_3 | 0.51 | 42.0 | 3.81e-01 | 98.0% | 65.2% |
| 4182456 | 331.2.1.1 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV | 0.50 | 33.0 | 3.50e-01 | 91.0% | 78.8% |