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KR091942.1__AKI28554.1__18India_53__00053

Bact-Vir

KR091942.1__AKI28554.1__18India_53__00053

Identity

Accession:
KR091942 ↗
Kingdom:
phage

Quality

75.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Salmonella_phage_18-India

TaxID: 1647402

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-44
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ofzA01 1.20.58.1800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.85 59.0 4.26e-01 76.2% 27.4%
2v1xA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 72.0 5.23e-01 97.6% 44.5%
1bh9B00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.82 63.0 4.83e-01 92.9% 39.3%
6muwB00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.81 68.0 4.27e-01 97.6% 18.3%
2be4A02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.78 56.0 4.24e-01 83.3% 32.7%
3f2bA05 6.10.50.10 Special › Helix non-globular › Insulin-like, subunit E › 0.73 52.0 5.07e-01 78.6% 68.8%
2bl0C01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.72 50.0 4.24e-01 73.8% 58.7%
3u9rB02 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.71 57.0 3.54e-01 95.2% 14.8%
4aurA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.69 56.0 3.41e-01 90.5% 96.7%
4mlmA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.69 58.0 3.82e-01 100.0% 44.1%
4i8oA03 1.10.8.1130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Bacterial toxin RNase RnlA/LsoA, C-terminal Dmd-binding domain 0.67 49.0 4.28e-01 81.0% 61.2%
3b0bB00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.66 54.0 4.25e-01 97.6% 44.3%
1wx0A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.61 42.0 2.80e-01 83.3% 15.2%
2daxA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.61 48.0 3.46e-01 92.9% 27.7%
4i5jA02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.59 50.0 3.44e-01 100.0% 41.4%
1ak2A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 47.0 3.06e-01 97.6% 35.0%
1id1A00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 47.0 3.31e-01 95.2% 49.7%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4644218 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.87 77.0 6.07e-01 100.0% 51.8%
4988046 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.87 65.0 6.18e-01 81.0% 68.0%
3276794 2006.1.4.5 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XRN_N 0.86 74.0 4.50e-01 97.6% 16.1%
3702325 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.85 67.0 6.09e-01 92.9% 65.5%
3391047 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.84 66.0 5.91e-01 97.6% 61.7%
3456840 4082.1.1.0 ↗ alpha duplicates or obligate multimers › Hairy Orange domain › Hairy Orange domain › Hairy Orange domain 0.82 72.0 7.06e-01 100.0% 93.3%
4269306 101.1.1.287 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PF28388 0.81 60.0 5.64e-01 81.0% 66.0%
5070743 103.5.1.0 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.77 55.0 5.41e-01 76.2% 71.1%
3273047 604.5.1.31 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › TRAM_LAG1_CLN8 0.75 62.0 3.96e-01 100.0% 61.3%
3873692 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.72 57.0 5.24e-01 88.1% 67.3%
4948317 103.5.1.0 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.72 57.0 5.46e-01 90.5% 76.0%
3970080 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.71 55.0 3.84e-01 90.5% 25.5%
5077829 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.70 54.0 4.61e-01 95.2% 50.7%
3324151 231.1.1.2 ↗ a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › Molybdenum cofactor-binding domain › MoCoBD_2 0.69 56.0 3.61e-01 97.6% 19.1%
3234731 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.67 53.0 4.81e-01 97.6% 63.1%
4972259 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.66 49.0 4.28e-01 95.2% 50.7%
3620217 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.63 51.0 4.37e-01 97.6% 53.3%
3464534 101.1.2.641 ↗ alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1, DUF7647 0.61 44.0 2.52e-01 90.5% 6.7%
3988910 101.1.1.382 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DDE_Tnp_IS66 0.60 41.0 4.03e-01 73.8% 64.4%
3341266 192.19.1.0 ↗ alpha bundles › Long alpha-hairpin › YnzC-like › YnzC-like 0.59 44.0 4.70e-01 83.3% 100.0%
3987150 101.1.1.382 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DDE_Tnp_IS66 0.55 42.0 4.03e-01 85.7% 74.0%