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KR093630.1__AKI27244.1__X__00009
Bact-VirKR093630.1__AKI27244.1__X__00009
Identity
- Accession:
- KR093630 ↗
- Kingdom:
- phage
Quality
77.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-60
Domain cluster:
rep: NC_074659.1__YP_010773084.1__QIT80_gp67__00067__D9-64
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2c4eA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.74 | 66.0 | 4.16e-01 | 100.0% | 79.6% |
| 4hn9A01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.74 | 64.0 | 5.02e-01 | 100.0% | 73.8% |
| 1booA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.72 | 61.0 | 3.95e-01 | 96.6% | 74.1% |
| 2dstA00 | 3.40.50.12270 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.72 | 62.0 | 4.96e-01 | 100.0% | 69.7% |
| 4i3vA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.71 | 63.0 | 4.08e-01 | 100.0% | 41.3% |
| 4us5C00 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.70 | 54.0 | 3.38e-01 | 84.7% | 64.2% |
| 3dmyA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.70 | 60.0 | 4.58e-01 | 98.3% | 74.8% |
| 4inoA01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.68 | 58.0 | 4.56e-01 | 100.0% | 71.3% |
| 2ffeA01 | 3.40.50.10680 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CofD-like domains | 0.68 | 58.0 | 4.00e-01 | 100.0% | 88.6% |
| 5ysqB00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.66 | 55.0 | 3.62e-01 | 100.0% | 82.5% |
| 2yvlA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.65 | 55.0 | 3.96e-01 | 100.0% | 75.7% |
| 1yb2A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.65 | 55.0 | 3.76e-01 | 100.0% | 63.5% |
| 1nqkA00 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.64 | 49.0 | 3.07e-01 | 84.7% | 76.5% |
| 2rirE01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.64 | 55.0 | 4.15e-01 | 100.0% | 83.4% |
| 3q7rA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.63 | 55.0 | 4.54e-01 | 100.0% | 80.0% |
| 6ckmA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.63 | 57.0 | 3.76e-01 | 100.0% | 29.8% |
| 6ie0A02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.63 | 54.0 | 4.22e-01 | 100.0% | 88.1% |
| 1o13A00 | 3.30.420.130 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Dinitrogenase iron-molybdenum cofactor biosynthesis domain | 0.63 | 53.0 | 4.45e-01 | 96.6% | 84.9% |
| 5towB02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.63 | 53.0 | 3.99e-01 | 100.0% | 81.2% |
| 3ju8A02 | 3.40.309.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 2 › Aldehyde Dehydrogenase; Chain A, domain 2 | 0.63 | 50.0 | 3.64e-01 | 94.9% | 95.8% |
| 8dpkD01 | 3.75.10.10 | Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A | 0.62 | 47.0 | 3.08e-01 | 83.1% | 82.3% |
| 5ggiB01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.61 | 56.0 | 3.66e-01 | 100.0% | 30.0% |
| 2yx6D01 | 3.30.420.130 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Dinitrogenase iron-molybdenum cofactor biosynthesis domain | 0.61 | 52.0 | 4.37e-01 | 96.6% | 84.3% |
| 4py5A02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.61 | 52.0 | 3.68e-01 | 100.0% | 66.7% |
| 2im5A00 | 3.20.140.10 | Alpha Beta › Alpha-Beta Barrel › nicotinate phosphoribosyltransferase › nicotinate phosphoribosyltransferase | 0.60 | 45.0 | 2.82e-01 | 86.4% | 54.0% |
| 2vx7A00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.60 | 54.0 | 3.26e-01 | 100.0% | 37.1% |
| 1r3dA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.59 | 49.0 | 3.36e-01 | 100.0% | 84.4% |
| 6tdxG01 | 3.40.1380.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit | 0.58 | 51.0 | 3.49e-01 | 100.0% | 31.3% |
| 1lucB00 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.57 | 45.0 | 2.91e-01 | 91.5% | 79.7% |
| 3ckjA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.57 | 50.0 | 3.18e-01 | 100.0% | 20.7% |
| 1foaA01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.56 | 49.0 | 3.34e-01 | 100.0% | 38.5% |
| 1kolA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 43.0 | 3.37e-01 | 96.6% | 52.7% |
| 3ceuA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.51 | 43.0 | 3.08e-01 | 100.0% | 32.5% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3467539 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.80 | 71.0 | 4.43e-01 | 100.0% | 74.0% |
| 3447174 | 7512.1.1.77 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_N | 0.79 | 70.0 | 4.50e-01 | 100.0% | 77.5% |
| 3337347 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.78 | 67.0 | 5.05e-01 | 96.6% | 95.7% |
| 3648168 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.77 | 68.0 | 4.53e-01 | 100.0% | 61.4% |
| 3647281 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.77 | 68.0 | 4.87e-01 | 100.0% | 80.0% |
| 3364357 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.76 | 66.0 | 4.95e-01 | 98.3% | 90.3% |
| 4082307 | 4978.1.1.1 ↗ | a/b three-layered sandwiches › a/b domain in AF0625-like proteins › a/b domain in AF0625-like proteins › a/b domain in AF0625-like proteins › tRNA_deacylase | 0.74 | 62.0 | 4.98e-01 | 94.9% | 70.8% |
| 2050255 | 2007.1.14.5 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Peripla_BP_2 | 0.74 | 65.0 | 4.70e-01 | 100.0% | 57.8% |
| 3686826 | 7512.1.1.10 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_28 | 0.73 | 63.0 | 4.65e-01 | 98.3% | 96.9% |
| 4083833 | 2007.1.16.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Iron-sulphur enzyme Dph2 › Diphthamide_syn | 0.71 | 62.0 | 4.65e-01 | 100.0% | 75.3% |
| 4900638 | 2007.1.14.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Oxidored_nitro | 0.69 | 61.0 | 4.69e-01 | 100.0% | 74.1% |
| 3289106 | 7580.1.1.1 ↗ | a/b three-layered sandwiches › RibA-like › RibA-like › RibA-like › GTP_cyclohydro2 | 0.68 | 57.0 | 4.05e-01 | 98.3% | 65.1% |
| 3789055 | 2006.1.4.10 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_4 | 0.67 | 59.0 | 4.23e-01 | 100.0% | 80.0% |
| 3957811 | 2002.1.1.16 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase | 0.66 | 51.0 | 3.46e-01 | 84.7% | 89.1% |
| 3838032 | 2007.1.14.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like | 0.66 | 57.0 | 4.34e-01 | 100.0% | 68.3% |
| 4029001 | 2004.1.1.123 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_RecD | 0.65 | 57.0 | 3.65e-01 | 100.0% | 49.7% |
| 5048941 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.65 | 56.0 | 4.75e-01 | 100.0% | 75.0% |
| 4975913 | 2008.1.1.220 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_10 | 0.65 | 48.0 | 3.92e-01 | 83.1% | 94.2% |
| 3649616 | 2003.1.5.115 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_29 | 0.63 | 54.0 | 3.50e-01 | 100.0% | 48.8% |
| 4362922 | 7559.1.1.1 ↗ | a/b three-layered sandwiches › Ribosomal protein L4 › Ribosomal protein L4 › Ribosomal protein L4 › Ribosomal_L4 | 0.63 | 47.0 | 3.33e-01 | 81.4% | 43.6% |
| 3668297 | 2003.1.5.115 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_29 | 0.62 | 52.0 | 3.77e-01 | 100.0% | 70.8% |
| 4937086 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.62 | 51.0 | 3.77e-01 | 100.0% | 88.9% |
| 4057206 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.61 | 54.0 | 4.64e-01 | 100.0% | 81.1% |
| 3284222 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.61 | 52.0 | 3.49e-01 | 100.0% | 25.8% |
| 1877721 | 7516.1.1.14 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › GNT-I | 0.61 | 55.0 | 3.31e-01 | 100.0% | 17.9% |
| 3965824 | 7522.1.1.5 ↗ | a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › Transketolase_C_1 | 0.61 | 49.0 | 3.65e-01 | 100.0% | 60.5% |
| 3736535 | 2003.1.1.46 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › F420_oxidored | 0.60 | 50.0 | 3.56e-01 | 100.0% | 79.1% |
| 4998732 | 2484.4.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Nitrogenase accessory factor-like › Nitrogenase accessory factor-like › Nitro_FeMo-Co | 0.60 | 50.0 | 4.21e-01 | 100.0% | 84.5% |
| 5029886 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.60 | 53.0 | 3.27e-01 | 100.0% | 17.3% |
| 3292011 | 2003.1.5.154 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_29, Methyltransf_11 | 0.58 | 44.0 | 2.62e-01 | 100.0% | 10.1% |
| 3512293 | 7568.1.1.4 ↗ | a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT_2 | 0.58 | 49.0 | 4.12e-01 | 100.0% | 58.2% |
| 5020749 | 2484.1.1.23 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hydantoinase_A | 0.58 | 47.0 | 3.39e-01 | 100.0% | 93.2% |
| 5023680 | 3407.1.1.2 ↗ | mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Nop5_56-rel_N_Arc | 0.57 | 48.0 | 3.77e-01 | 100.0% | 62.1% |
| 4987485 | 7516.1.1.1 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transferase | 0.57 | 48.0 | 3.30e-01 | 100.0% | 35.7% |
| 5010692 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.57 | 46.0 | 3.48e-01 | 100.0% | 84.6% |
| 4994127 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.56 | 49.0 | 3.28e-01 | 100.0% | 24.6% |
| 3621369 | 7516.1.1.14 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › GNT-I | 0.54 | 45.0 | 2.81e-01 | 100.0% | 15.7% |
| 5079340 | 7516.1.1.11 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › CTP_transf_3 | 0.53 | 44.0 | 3.02e-01 | 98.3% | 51.3% |
| 5083576 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.53 | 45.0 | 3.11e-01 | 100.0% | 26.2% |
| 3760588 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.52 | 45.0 | 3.18e-01 | 100.0% | 31.8% |
| 5058303 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.52 | 46.0 | 3.10e-01 | 100.0% | 28.0% |
| 3468855 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.52 | 42.0 | 3.28e-01 | 100.0% | 79.4% |
| 4598963 | 7516.1.1.0 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases | 0.51 | 42.0 | 2.83e-01 | 91.5% | 78.3% |