Back to structures

KR093631.1__AKI27324.1__X__00033

Bact-Vir

KR093631.1__AKI27324.1__X__00033

Identity

Accession:
KR093631 ↗
Kingdom:
phage

Quality

81.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-57
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3osgA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.69 50.0 4.87e-01 86.8% 70.0%
4rgxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 56.0 4.27e-01 96.2% 45.5%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 55.0 4.98e-01 100.0% 67.1%
2lvsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 52.0 5.18e-01 100.0% 85.7%
3p7nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 57.0 5.17e-01 100.0% 76.4%
6jqsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 54.0 5.11e-01 98.1% 91.0%
7l1iA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 54.0 3.97e-01 98.1% 43.1%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 52.0 4.60e-01 100.0% 72.4%
1l3lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 52.0 4.98e-01 96.2% 85.7%
6uglB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 52.0 5.10e-01 96.2% 87.9%
2q0oA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 53.0 4.97e-01 100.0% 82.1%
4mloA03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.60 50.0 4.90e-01 98.1% 85.2%
5y2vC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 49.0 4.36e-01 100.0% 71.8%
5jldA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.59 45.0 2.90e-01 96.2% 18.5%
1jhgA00 1.10.1270.10 Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like 0.58 47.0 3.97e-01 98.1% 53.5%
1on2A02 1.10.60.10 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Iron dependent repressor, metal binding and dimerisation domain 0.58 39.0 3.80e-01 86.8% 61.9%
1z2iA01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.57 43.0 3.64e-01 83.0% 91.4%
2nyvA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.54 44.0 4.24e-01 96.2% 93.8%
4hfkB00 1.20.120.1620 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.53 46.0 3.80e-01 100.0% 57.1%
2fi1A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.51 36.0 3.54e-01 86.8% 70.3%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4321283 101.1.1.378 alpha arrays › HTH › HTH › Three-helical HTH › Terminase_2 0.90 81.0 8.00e-01 100.0% 94.5%
3517677 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.73 61.0 5.80e-01 100.0% 78.5%
3280590 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.70 61.0 5.93e-01 100.0% 90.0%
3945774 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.70 58.0 5.97e-01 100.0% 98.0%
3279784 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.69 60.0 5.94e-01 100.0% 92.7%
5058068 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.68 57.0 4.91e-01 98.1% 73.3%
4958468 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.68 60.0 5.83e-01 100.0% 91.7%
3277964 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.68 57.0 5.88e-01 94.3% 98.0%
4966360 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 58.0 5.05e-01 100.0% 72.9%
3984767 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.68 57.0 5.55e-01 100.0% 83.3%
5047331 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 52.0 4.51e-01 100.0% 52.2%
4933929 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 57.0 5.19e-01 100.0% 80.0%
3943189 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.67 55.0 5.52e-01 100.0% 89.1%
3976103 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.67 58.0 5.48e-01 100.0% 84.6%
3979083 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.67 60.0 5.82e-01 100.0% 89.8%
5062774 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 57.0 4.09e-01 100.0% 42.4%
5037848 101.1.2.950 alpha arrays › HTH › HTH › winged helix domain › PF29171 0.66 57.0 5.14e-01 100.0% 81.3%
3771267 101.1.1.3 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.66 54.0 5.02e-01 100.0% 72.9%
3394042 101.1.1.3 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.66 54.0 4.81e-01 100.0% 61.4%
3503708 101.1.1.35 alpha arrays › HTH › HTH › Three-helical HTH › HTH_psq 0.66 48.0 4.55e-01 94.3% 64.6%
3943860 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.66 59.0 5.85e-01 100.0% 98.2%
3693390 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.66 53.0 5.14e-01 100.0% 81.7%
3619451 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.65 51.0 4.83e-01 98.1% 72.3%
4133453 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 48.0 4.77e-01 88.7% 83.6%
3285933 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.62 54.0 5.21e-01 100.0% 88.3%
3968456 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.62 50.0 4.09e-01 94.3% 47.2%
4458965 101.1.1.63 alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.60 49.0 4.46e-01 100.0% 77.5%
4529157 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.60 50.0 4.25e-01 96.2% 58.9%
3964047 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.59 50.0 4.06e-01 100.0% 86.4%
3288934 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.59 49.0 4.81e-01 98.1% 90.0%
3963336 2484.1.1.107 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1595 0.59 50.0 3.38e-01 100.0% 93.0%
3964524 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.59 50.0 3.54e-01 100.0% 91.4%
4067934 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.58 48.0 4.14e-01 96.2% 64.4%
4081576 101.1.6.1 alpha arrays › HTH › HTH › TrpR › Trp_repressor 0.58 47.0 4.02e-01 98.1% 53.7%
5058606 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 47.0 4.36e-01 98.1% 69.3%
3963536 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.57 49.0 3.88e-01 100.0% 87.0%
3963117 606.1.1.0 alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.56 46.0 3.43e-01 100.0% 34.5%
D2 medium residues 67-98
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5mi7A03 1.20.58.460 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like 0.72 54.0 3.24e-01 100.0% 11.0%
1ya0A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.71 56.0 3.52e-01 100.0% 21.8%
1yzmA00 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.70 55.0 5.12e-01 100.0% 71.7%
4dciA00 6.10.140.1110 Special › Helix non-globular › Helix Hairpins › 0.68 53.0 3.59e-01 100.0% 52.4%
4u04B01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.68 54.0 4.15e-01 100.0% 46.6%
1z0jB00 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.68 54.0 4.87e-01 100.0% 64.7%
6he1B01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.68 52.0 4.45e-01 100.0% 50.0%
3ne5B04 6.10.140.730 Special › Helix non-globular › Helix Hairpins › 0.67 54.0 4.81e-01 96.9% 64.7%
1u5tA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 55.0 4.32e-01 100.0% 76.0%
3cb2A02 3.30.1330.20 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain 0.67 55.0 3.92e-01 93.8% 54.5%
3cuqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 55.0 4.19e-01 100.0% 75.3%
3k59A06 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.65 55.0 4.94e-01 100.0% 68.1%
4jleA00 6.10.280.180 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Plasmodium RESA, N-terminal helical domain 0.64 47.0 3.10e-01 84.4% 20.8%
5mmiJ02 1.10.10.250 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L11/L12, C-terminal domain 0.64 53.0 4.22e-01 100.0% 65.2%
4h63H01 1.20.58.1710 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 51.0 4.10e-01 100.0% 45.8%
7jplA01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 48.0 3.50e-01 100.0% 54.7%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 47.0 3.96e-01 100.0% 54.9%
7ce1A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.63 50.0 4.51e-01 100.0% 76.9%
2o4cA03 3.30.1370.170 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Erythronate-4-phosphate dehydrogenase, dimerisation domain 0.63 45.0 3.36e-01 87.5% 28.4%
2vx2G02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.63 47.0 4.10e-01 96.9% 50.9%
4ib4A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.63 48.0 2.90e-01 100.0% 40.4%
4ptsB02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.60 44.0 2.94e-01 100.0% 20.9%
3m1cB01 3.30.390.170 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.60 43.0 3.26e-01 100.0% 30.3%
3dboB00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.60 44.0 3.04e-01 75.0% 35.7%
3ppuB02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.58 44.0 3.24e-01 100.0% 31.0%
1f81A00 1.20.1020.10 Mainly Alpha › Up-down Bundle › CREB-binding Protein; Chain A › TAZ domain 0.54 43.0 3.39e-01 100.0% 74.7%
3hhwK01 1.10.3570.10 Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like fold › Rhabdovirus nucleocapsid protein like domain 0.53 35.0 2.46e-01 100.0% 29.5%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3959510 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.90 80.0 4.36e-01 100.0% 8.7%
3952349 2004.1.1.363 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase+UvrD_C 0.90 80.0 4.22e-01 100.0% 5.0%
4301862 109.4.1.646 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › LCD1 0.85 75.0 4.08e-01 100.0% 6.9%
3243317 109.4.1.1463 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28490 0.83 69.0 3.62e-01 100.0% 4.9%
3257065 2486.1.1.11 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › ECH_2 0.83 71.0 3.99e-01 100.0% 8.7%
4003482 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.82 68.0 3.72e-01 100.0% 14.6%
4066875 7005.1.1.2 a+b duplicates or obligate multimers › LUBAC-tethering domain › LUBAC-tethering domain › LUBAC-tethering domain › LTM 0.77 63.0 5.61e-01 100.0% 66.0%
3900350 7005.1.1.2 a+b duplicates or obligate multimers › LUBAC-tethering domain › LUBAC-tethering domain › LUBAC-tethering domain › LTM 0.74 58.0 5.38e-01 96.9% 71.1%
3683629 109.3.1.188 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › PF28568 0.73 58.0 3.31e-01 100.0% 11.4%
3675476 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.71 57.0 3.46e-01 100.0% 14.6%
3600712 192.5.1.0 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat 0.71 57.0 4.38e-01 100.0% 40.0%
4053061 192.6.1.0 alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.70 54.0 4.98e-01 100.0% 95.9%
5072052 3718.1.1.0 alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT 0.69 54.0 4.54e-01 100.0% 50.8%
3280308 192.11.1.0 alpha bundles › Long alpha-hairpin › C-terminal UvrC-binding domain of UvrB › C-terminal UvrC-binding domain of UvrB 0.68 54.0 5.38e-01 100.0% 94.3%
3552824 3877.1.1.1 alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP 0.68 54.0 3.34e-01 100.0% 17.3%
3676669 109.4.1.775 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 53.0 3.72e-01 100.0% 29.2%
3674753 192.1.1.23 alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › DUF3493 0.66 51.0 4.27e-01 100.0% 47.1%
4569385 377.1.1.2 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_S14 0.66 55.0 4.03e-01 100.0% 33.7%
4503392 184.1.1.1 alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Glycos_trans_3N 0.65 53.0 4.27e-01 100.0% 65.7%
4521514 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.64 49.0 4.07e-01 100.0% 44.0%
3977118 101.1.4.2 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › LacI 0.64 53.0 4.57e-01 100.0% 80.0%
4120501 3615.1.1.53 alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › DUF3654 0.61 49.0 2.97e-01 100.0% 37.3%
5073502 159.1.1.0 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 0.58 44.0 3.50e-01 100.0% 35.6%
4178707 192.6.1.1 alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain › ATP-synt_DE 0.58 44.0 4.05e-01 100.0% 66.0%