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KR093642.1__AKI27779.1__X__00042
Bact-VirKR093642.1__AKI27779.1__X__00042
Identity
- Accession:
- KR093642 ↗
- Kingdom:
- phage
Quality
71.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-39
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vhjA02 | 2.30.270.20 | Mainly Beta › Roll › duf1285 protein fold › | 0.73 | 58.0 | 5.01e-01 | 89.7% | 83.9% |
| 3klkA01 | 2.10.270.10 | Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding | 0.72 | 52.0 | 3.46e-01 | 79.5% | 41.6% |
| 4tvcA01 | 2.10.270.10 | Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding | 0.69 | 50.0 | 3.21e-01 | 79.5% | 24.5% |
| 3ho6B00 | 3.40.50.11050 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › MARTX cysteine protease (CPD) domain | 0.65 | 44.0 | 2.74e-01 | 71.8% | 21.7% |
| 2jxwA00 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.64 | 46.0 | 3.78e-01 | 82.1% | 41.3% |
| 4a4yA01 | 2.60.200.50 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.63 | 46.0 | 3.57e-01 | 82.1% | 40.8% |
| 3j7aF02 | 2.40.50.740 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain | 0.63 | 44.0 | 4.12e-01 | 84.6% | 58.8% |
| 4g7nA02 | 3.30.1120.130 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.62 | 52.0 | 4.02e-01 | 100.0% | 63.9% |
| 6az1E02 | 2.40.50.740 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain | 0.61 | 42.0 | 3.95e-01 | 82.1% | 56.9% |
| 3le4A00 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.61 | 43.0 | 3.98e-01 | 79.5% | 78.2% |
| 6b4oA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.59 | 41.0 | 2.97e-01 | 79.5% | 24.6% |
| 4c3iG02 | 2.40.50.1060 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.58 | 45.0 | 3.09e-01 | 87.2% | 50.4% |
| 1ye8A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 48.0 | 3.20e-01 | 100.0% | 75.4% |
| 3eebA00 | 3.40.50.11050 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › MARTX cysteine protease (CPD) domain | 0.56 | 41.0 | 2.69e-01 | 79.5% | 15.1% |
| 1tk7A01 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.56 | 38.0 | 3.94e-01 | 74.4% | 94.6% |
| 4bpnW02 | 2.40.50.740 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain | 0.56 | 39.0 | 3.74e-01 | 84.6% | 58.8% |
| 3ab1B01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.56 | 43.0 | 2.76e-01 | 89.7% | 32.5% |
| 4hb9A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.55 | 44.0 | 2.56e-01 | 92.3% | 11.2% |
| 3we0A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.55 | 44.0 | 2.71e-01 | 94.9% | 16.3% |
| 1b98A00 | 2.10.90.10 | Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines | 0.55 | 38.0 | 2.98e-01 | 76.9% | 39.8% |
| 1a2fA02 | 1.10.420.10 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 2 › Peroxidase, domain 2 | 0.55 | 37.0 | 2.80e-01 | 74.4% | 25.6% |
| 1ffvB04 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.54 | 44.0 | 2.88e-01 | 100.0% | 61.6% |
| 1rjhA00 | 3.10.100.10 | Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A | 0.52 | 40.0 | 2.93e-01 | 89.7% | 31.4% |
| 2j8gA03 | 2.20.120.10 | Mainly Beta › Single Sheet › Multimodular pneumococcal cell wall endolysin, domain 3 › Multimodular pneumococcal cell wall endolysin, domain 3 | 0.52 | 39.0 | 3.60e-01 | 100.0% | 62.1% |
| 3kbgA02 | 2.40.50.740 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain | 0.50 | 35.0 | 3.27e-01 | 84.6% | 56.6% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3800040 | 5.1.4.422 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_Rol-3 | 0.77 | 63.0 | 3.86e-01 | 97.4% | 15.6% |
| 4591362 | 702.1.1.4 ↗ | beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack | 0.76 | 55.0 | 3.46e-01 | 76.9% | 32.6% |
| 4948537 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.72 | 57.0 | 3.35e-01 | 94.9% | 13.1% |
| 3579473 | 209.1.1.1 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C | 0.70 | 53.0 | 3.88e-01 | 87.2% | 33.9% |
| 2531530 | 702.1.1.0 ↗ | beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack | 0.70 | 51.0 | 3.36e-01 | 79.5% | 21.5% |
| 4053431 | 375.1.1.37 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon | 0.69 | 55.0 | 4.93e-01 | 89.7% | 100.0% |
| 3790336 | 5.1.3.164 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_Rol-3 | 0.68 | 60.0 | 3.68e-01 | 100.0% | 22.1% |
| 4949453 | 2.1.1.9 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e | 0.66 | 45.0 | 3.88e-01 | 74.4% | 80.0% |
| 4026161 | 4.1.1.7 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 | 0.65 | 43.0 | 3.08e-01 | 71.8% | 21.6% |
| 1391704 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.65 | 45.0 | 3.16e-01 | 82.1% | 23.0% |
| 3388785 | 109.1.1.11 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › Arc1p_N_like | 0.65 | 47.0 | 3.17e-01 | 82.1% | 63.6% |
| 5035446 | 2.1.1.9 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e | 0.65 | 45.0 | 4.04e-01 | 74.4% | 89.1% |
| 4966737 | 2.1.1.9 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e | 0.64 | 45.0 | 3.93e-01 | 74.4% | 78.3% |
| 3797675 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.64 | 54.0 | 3.46e-01 | 100.0% | 24.7% |
| 147657 | 73.1.1.5 ↗ | beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › PrgH | 0.64 | 46.0 | 3.37e-01 | 82.1% | 32.8% |
| 4623924 | 2.1.1.9 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e | 0.63 | 44.0 | 3.99e-01 | 74.4% | 85.5% |
| 5055783 | 101.1.2.70 ↗ | alpha arrays › HTH › HTH › winged helix domain › PqqD | 0.63 | 46.0 | 3.59e-01 | 82.1% | 35.6% |
| 3394681 | 252.1.1.1 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD | 0.63 | 46.0 | 4.46e-01 | 82.1% | 75.6% |
| 3267950 | 207.1.1.12 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FNIP | 0.63 | 44.0 | 2.92e-01 | 79.5% | 23.8% |
| 3599142 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.62 | 43.0 | 3.82e-01 | 82.1% | 48.3% |
| 4933326 | 101.1.2.70 ↗ | alpha arrays › HTH › HTH › winged helix domain › PqqD | 0.61 | 45.0 | 3.50e-01 | 84.6% | 36.4% |
| 3918968 | 5.1.4.12 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema | 0.60 | 47.0 | 2.83e-01 | 94.9% | 96.6% |
| 3641913 | 2.1.1.9 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e | 0.59 | 42.0 | 3.53e-01 | 84.6% | 41.3% |
| 3990001 | 4.8.1.5 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR | 0.59 | 44.0 | 4.06e-01 | 84.6% | 69.8% |
| 3662052 | 2.1.1.9 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e | 0.58 | 40.0 | 3.29e-01 | 84.6% | 35.3% |
| 2579116 | 2.1.1.9 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e | 0.58 | 44.0 | 3.83e-01 | 84.6% | 53.2% |
| 3659103 | 2.1.1.9 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e | 0.58 | 40.0 | 3.82e-01 | 84.6% | 60.0% |
| 4928472 | 101.1.2.70 ↗ | alpha arrays › HTH › HTH › winged helix domain › PqqD | 0.58 | 41.0 | 3.37e-01 | 79.5% | 40.0% |
| 3987436 | 4333.1.1.1 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › Methylase_S | 0.58 | 44.0 | 2.53e-01 | 89.7% | 40.8% |
| 4957651 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.56 | 40.0 | 2.54e-01 | 79.5% | 28.4% |
| 4288670 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.56 | 45.0 | 2.65e-01 | 92.3% | 12.4% |
| 4176722 | 719.2.1.1 ↗ | beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N | 0.55 | 39.0 | 2.99e-01 | 76.9% | 35.0% |
| 3262703 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.55 | 41.0 | 3.92e-01 | 97.4% | 72.0% |
| 3702861 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.55 | 38.0 | 3.61e-01 | 89.7% | 58.2% |
| 3798068 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.54 | 44.0 | 2.86e-01 | 100.0% | 74.7% |
| 3499652 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.53 | 45.0 | 2.75e-01 | 100.0% | 31.4% |
| 119529 | 3087.1.2.1 ↗ | few secondary structure elements › CDGSH iron-sulfur domains › CDGSH iron-sulfur domains › Type 3, 4, and 7 › zf-CDGSH | 0.52 | 33.0 | 2.97e-01 | 74.4% | 36.1% |
| 3268480 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.52 | 42.0 | 2.90e-01 | 100.0% | 49.4% |
| 4556449 | 6020.1.1.1 ↗ | a+b two layers › Beta domain of DivIB/FtsQ › Beta domain of DivIB/FtsQ › Beta domain of DivIB/FtsQ › FtsQ_DivIB_C | 0.51 | 39.0 | 2.95e-01 | 100.0% | 63.9% |