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KR093652.1__AKI28267.1__X__00042

Bact-Vir

KR093652.1__AKI28267.1__X__00042

Identity

Accession:
KR093652 ↗
Kingdom:
phage

Quality

63.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 82-145
PDB
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3d4eA02 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.82 74.0 6.84e-01 96.9% 91.0%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.76 51.0 4.45e-01 71.9% 48.9%
2qg7B01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.74 53.0 4.51e-01 75.0% 63.4%
1sxjH01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.74 46.0 3.66e-01 70.3% 32.3%
3d4eA01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.74 65.0 5.89e-01 96.9% 86.9%
3djwA00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.70 60.0 5.18e-01 92.2% 88.4%
1inlC02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.69 49.0 4.99e-01 75.0% 75.0%
2h36X00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.69 58.0 4.86e-01 92.2% 78.7%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 51.0 4.71e-01 79.7% 69.1%
3u1wA02 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 47.0 4.70e-01 73.4% 77.3%
4ntdA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.66 48.0 3.37e-01 78.1% 53.4%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 48.0 4.66e-01 79.7% 77.5%
4ftxB01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.63 48.0 3.96e-01 85.9% 73.4%
3dxpA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 46.0 4.10e-01 78.1% 93.5%
4ok4A02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.63 52.0 3.27e-01 92.2% 94.2%
1k90A02 3.90.1760.10 Alpha Beta › Alpha-Beta Complex › Adenylylcyclase toxin fold › Anthrax toxin, edema factor, central domain 0.63 52.0 3.97e-01 95.3% 79.2%
1o5yA00 3.10.690.10 Alpha Beta › Roll › Bifunctional nuclease domain › Bifunctional nuclease domain 0.62 42.0 3.28e-01 70.3% 48.3%
4ktpA01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.62 54.0 3.67e-01 100.0% 72.8%
4cy8A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 43.0 2.92e-01 75.0% 59.3%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.61 47.0 3.42e-01 85.9% 79.8%
5chtB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.60 48.0 3.13e-01 89.1% 90.3%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.60 49.0 3.98e-01 89.1% 78.3%
1c8bA00 3.40.50.1450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HybD-like 0.60 50.0 3.21e-01 93.8% 60.6%
3tc9A02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.59 51.0 3.30e-01 100.0% 27.6%
4msxA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.59 51.0 3.32e-01 98.4% 92.7%
2psbA00 3.50.90.10 Alpha Beta › 3-Layer(bba) Sandwich › YerB-like fold › YerB-like 0.59 46.0 2.91e-01 82.8% 61.4%
6mlyB01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 52.0 3.46e-01 100.0% 34.0%
1mdaH00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 53.0 3.24e-01 100.0% 19.3%
7sulB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 52.0 3.29e-01 100.0% 26.3%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.58 46.0 4.02e-01 87.5% 72.0%
5cqfA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 47.0 2.83e-01 89.1% 31.7%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 45.0 4.53e-01 87.5% 93.8%
1dhkB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 45.0 3.20e-01 87.5% 42.6%
3imoC00 3.30.920.70 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › 0.56 42.0 3.64e-01 82.8% 74.8%
3nybA02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.56 42.0 3.62e-01 84.4% 85.5%
1x05A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 44.0 3.58e-01 89.1% 72.1%
6ywnA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.55 41.0 3.54e-01 81.2% 88.9%
3d89A00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.55 43.0 3.48e-01 89.1% 87.5%
4u6bA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 50.0 3.10e-01 100.0% 21.0%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 39.0 3.97e-01 79.7% 93.4%
1v43A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 39.0 3.94e-01 78.1% 93.8%
5gqoA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 43.0 3.76e-01 89.1% 75.3%
4m00A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 43.0 2.97e-01 90.6% 53.8%
2k6pA00 3.10.290.10 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain 0.53 37.0 3.48e-01 76.6% 95.2%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 44.0 3.86e-01 98.4% 66.7%
4qq1C03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.53 37.0 3.44e-01 76.6% 75.0%
2g3mF01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.53 42.0 3.28e-01 92.2% 75.7%
3jcmN01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 38.0 2.64e-01 78.1% 91.8%
2ppqA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 37.0 3.37e-01 78.1% 97.9%
6iw6A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.52 39.0 3.37e-01 84.4% 92.6%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 39.0 3.73e-01 84.4% 96.0%
1o9aA01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.50 30.0 3.41e-01 79.7% 86.4%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5079534 809.1.1.0 a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP 0.87 80.0 6.82e-01 96.9% 85.3%
3963560 6043.1.1.0 a+b two layers › yfeY-like › yfeY-like › yfeY-like 0.80 62.0 6.44e-01 90.6% 88.3%
4656512 809.1.1.0 a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP 0.77 64.0 6.66e-01 89.1% 100.0%
3972316 809.1.1.0 a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP 0.77 68.0 6.79e-01 100.0% 93.8%
3963561 809.1.1.0 a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP 0.76 64.0 6.25e-01 92.2% 88.6%
1760289 809.1.1.3 a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › DUF3862 0.74 65.0 5.89e-01 96.9% 86.9%
3743299 4026.1.1.0 a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.72 53.0 4.39e-01 81.2% 45.5%
3338126 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.71 54.0 3.52e-01 79.7% 26.3%
3831579 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.71 53.0 3.32e-01 79.7% 21.6%
3817626 881.1.1.1 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.70 56.0 4.08e-01 89.1% 57.8%
3596021 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.69 51.0 3.07e-01 78.1% 11.9%
5033517 243.1.1.23 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF3887 0.69 51.0 4.44e-01 79.7% 97.0%
1140900 809.2.1.0 a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.68 47.0 4.89e-01 73.4% 88.1%
3784883 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.67 46.0 2.91e-01 79.7% 14.4%
4570530 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.66 51.0 4.42e-01 85.9% 99.0%
3239098 5.1.1.7 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed › PF27563 0.66 48.0 3.72e-01 78.1% 44.8%
4996248 331.19.1.0 a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains 0.66 52.0 4.69e-01 87.5% 73.3%
3983339 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.66 52.0 3.63e-01 85.9% 30.0%
3694428 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.66 44.0 2.67e-01 70.3% 32.6%
3929846 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.65 49.0 3.11e-01 79.7% 17.2%
4507316 220.1.1.20 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.65 47.0 3.91e-01 76.6% 63.5%
4932673 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.65 53.0 4.72e-01 89.1% 87.8%
3209046 109.4.1.559 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tuberin 0.65 49.0 3.20e-01 82.8% 19.0%
4879580 71.1.1.2 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.65 56.0 4.25e-01 96.9% 52.3%
3640483 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 49.0 3.34e-01 82.8% 23.8%
1170462 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.64 48.0 4.90e-01 79.7% 90.2%
3672647 5.1.4.297 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, NBCH_WD40 0.64 53.0 3.16e-01 89.1% 69.0%
3974596 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.64 45.0 4.79e-01 78.1% 87.3%
3232091 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 50.0 4.18e-01 87.5% 68.7%
4940816 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.63 49.0 4.41e-01 87.5% 68.4%
3174934 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.63 46.0 2.95e-01 78.1% 20.3%
3730229 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.63 39.0 3.78e-01 82.8% 53.3%
1140832 809.2.1.1 a+b two layers › BLIP-like › BT0923-like › BT0923-like › PepSY_like 0.62 43.0 4.47e-01 79.7% 80.0%
3510695 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.62 52.0 4.83e-01 92.2% 93.8%
3940470 5.1.4.320 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_LRRK2 0.62 56.0 3.38e-01 100.0% 17.5%
3742310 5.1.4.38 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC1 0.61 55.0 3.48e-01 100.0% 26.9%
3395421 5.1.3.11 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › MRJP 0.61 55.0 3.34e-01 100.0% 21.0%
3369627 5.1.4.226 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF7899 0.61 51.0 3.06e-01 100.0% 13.7%
3661053 5.1.5.132 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF7899 0.60 51.0 3.04e-01 100.0% 13.3%
3250134 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.60 48.0 3.88e-01 85.9% 77.5%
3575893 3459.1.1.1 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › FAIM1 0.60 48.0 4.24e-01 89.1% 66.3%
3739064 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 42.0 4.21e-01 81.2% 73.8%
5052753 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.59 41.0 3.10e-01 71.9% 41.2%
5022781 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.59 53.0 3.30e-01 100.0% 21.4%
3554160 5.1.4.18 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EPTP 0.59 54.0 3.34e-01 100.0% 20.6%
3598831 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.58 46.0 3.97e-01 87.5% 55.0%
3659251 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.58 51.0 3.31e-01 100.0% 22.9%
3933159 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 51.0 3.24e-01 100.0% 20.7%
3980371 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 40.0 3.48e-01 73.4% 81.0%
1179397 316.1.1.36 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central 0.57 42.0 3.24e-01 81.2% 59.6%
3241447 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.55 44.0 3.55e-01 87.5% 45.8%
5007535 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.55 39.0 3.74e-01 78.1% 88.7%
3412604 5.1.4.224 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_RFWD3 0.54 48.0 3.02e-01 100.0% 22.1%
3978997 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.54 36.0 3.29e-01 79.7% 47.4%
3622139 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.54 43.0 3.89e-01 90.6% 70.0%
3688914 283.1.1.4 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › ThrE 0.53 44.0 3.40e-01 89.1% 69.3%
3585833 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.52 41.0 3.60e-01 93.8% 64.5%
3281618 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.52 39.0 3.48e-01 85.9% 82.0%
3656110 5.1.3.144 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.51 44.0 2.82e-01 100.0% 24.1%
4565130 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 41.0 3.68e-01 92.2% 82.1%