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KR093656.1__AKI28495.1__X__00039

Bact-Vir

KR093656.1__AKI28495.1__X__00039

Identity

Accession:
KR093656 ↗
Kingdom:
phage

Quality

77.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-56
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lmlA01 3.10.450.690 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 55.0 4.27e-01 92.5% 88.4%
4hqeA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 55.0 4.51e-01 98.1% 61.0%
3lfkD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 52.0 4.30e-01 100.0% 50.9%
3zcoA00 1.10.10.2450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.63 52.0 4.11e-01 100.0% 75.6%
2b0lC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 52.0 4.46e-01 100.0% 64.9%
1ku9B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 51.0 4.53e-01 98.1% 72.4%
2f2eA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 51.0 4.43e-01 98.1% 65.9%
2l01A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 51.0 4.65e-01 100.0% 79.2%
1dctA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.62 53.0 3.74e-01 100.0% 34.7%
3w6kC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 51.0 4.45e-01 100.0% 72.4%
3g3zA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 49.0 4.79e-01 100.0% 95.3%
4c9yA00 1.10.10.1890 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ska1 microtubule binding domain-like 0.61 49.0 3.96e-01 100.0% 77.2%
4qjvA03 3.30.70.3110 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 42.0 4.03e-01 81.1% 62.9%
1wy5A02 1.20.59.20 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › 0.60 50.0 4.25e-01 100.0% 75.5%
3tgnB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 47.0 4.58e-01 98.1% 96.8%
3shpA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.59 51.0 3.64e-01 100.0% 40.1%
2eshA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 44.0 3.74e-01 100.0% 60.5%
1xe4A01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 47.0 3.44e-01 96.2% 64.6%
3mczA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 47.0 3.08e-01 96.2% 31.3%
1e3mA01 3.40.1170.10 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › DNA repair protein MutS, domain I 0.56 41.0 3.20e-01 79.2% 74.0%
1t6sB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 44.0 4.14e-01 100.0% 74.0%
3lapA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 46.0 4.36e-01 100.0% 95.6%
2fl4A02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 49.0 3.93e-01 98.1% 65.4%
2o0bA02 3.65.10.10 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain 0.56 46.0 3.19e-01 100.0% 27.0%
3s93A00 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.56 44.0 4.06e-01 100.0% 91.3%
3pqvC01 3.65.10.20 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › RNA 3'-terminal phosphate cyclase domain 0.56 45.0 3.05e-01 100.0% 47.5%
3zx4A02 3.30.980.20 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Putative mannosyl-3-phosphoglycerate phosphatase; domain 2 0.55 48.0 4.14e-01 100.0% 81.6%
3juwA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 48.0 3.33e-01 96.2% 56.9%
3aawA02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.55 40.0 2.86e-01 79.2% 33.3%
2vz9A05 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 43.0 2.87e-01 96.2% 29.8%
2i7gB00 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.54 43.0 2.65e-01 90.6% 37.4%
3eo4D00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 48.0 3.39e-01 100.0% 78.4%
4dzrA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 46.0 3.31e-01 100.0% 35.0%
2kpmA01 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.54 43.0 4.00e-01 98.1% 97.3%
2pokA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.54 41.0 2.68e-01 88.7% 66.3%
8g3lE01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.53 44.0 3.18e-01 100.0% 90.4%
2p5kA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 41.0 4.03e-01 98.1% 98.4%
1j4wA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.51 36.0 3.33e-01 77.4% 75.7%
4gt8A00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.51 42.0 3.29e-01 100.0% 96.2%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.51 30.0 2.98e-01 100.0% 50.9%
4uhvA02 3.55.50.10 Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › Baseplate protein-like domains 0.50 41.0 3.61e-01 100.0% 81.5%
3topA01 4.10.110.10 Few Secondary Structures › Irregular › Spasmolytic Protein; domain 1 › Spasmolytic Protein, domain 1 0.50 32.0 3.40e-01 77.4% 89.5%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3921187 320.4.1.7 a+b two layers › R3H domain-like › PUB domain › PUB domain › PF26117 0.77 66.0 4.40e-01 100.0% 30.0%
5045522 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 62.0 4.03e-01 98.1% 26.1%
3448910 101.1.2.164 alpha arrays › HTH › HTH › winged helix domain › TFA2_Winged_2 0.69 58.0 4.84e-01 100.0% 58.0%
3515356 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 59.0 5.35e-01 98.1% 89.3%
3808247 101.1.2.164 alpha arrays › HTH › HTH › winged helix domain › TFA2_Winged_2 0.68 57.0 5.44e-01 100.0% 83.1%
4955755 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 58.0 5.62e-01 100.0% 90.0%
3395627 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.67 57.0 5.18e-01 100.0% 80.0%
3262891 101.1.2.79 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_I_A49 0.66 58.0 5.41e-01 98.1% 90.8%
5079721 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 55.0 5.53e-01 100.0% 94.5%
3916322 101.1.1.433 alpha arrays › HTH › HTH › Three-helical HTH › RPC5, RPC5_C 0.66 55.0 3.59e-01 98.1% 29.5%
4361150 2003.1.5.55 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PrmA 0.65 57.0 3.77e-01 100.0% 27.1%
4963658 2003.1.5.42 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_21 0.65 57.0 3.67e-01 100.0% 22.9%
3595128 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.65 55.0 5.23e-01 100.0% 89.2%
3738698 213.1.1.6 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › ODC_AZ 0.65 58.0 4.41e-01 100.0% 54.2%
4932249 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.64 56.0 3.66e-01 100.0% 23.7%
3365938 101.1.2.37 alpha arrays › HTH › HTH › winged helix domain › E2F_TDP 0.64 53.0 4.64e-01 100.0% 82.2%
5053885 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 52.0 4.41e-01 98.1% 55.0%
4020275 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 53.0 5.15e-01 98.1% 93.3%
5040489 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 51.0 4.48e-01 98.1% 61.1%
5056562 2003.1.5.82 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.64 54.0 3.81e-01 98.1% 37.7%
4992272 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 52.0 4.13e-01 98.1% 64.2%
235960 101.1.2.229 alpha arrays › HTH › HTH › winged helix domain › SIR3_C 0.63 52.0 4.11e-01 100.0% 75.6%
5062574 328.12.1.0 a+b two layers › IF3-like › IF3-like domain in Nudix hydrolase › IF3-like domain in Nudix hydrolase 0.63 55.0 4.57e-01 100.0% 73.7%
4161632 2003.1.5.55 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PrmA 0.62 55.0 3.72e-01 100.0% 31.3%
3285981 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 51.0 4.54e-01 100.0% 71.8%
4973677 2003.1.5.42 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_21 0.62 55.0 3.54e-01 100.0% 22.5%
3962221 101.1.2.78 alpha arrays › HTH › HTH › winged helix domain › AlkZ-like 0.62 50.0 4.66e-01 100.0% 84.0%
5062515 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.62 54.0 4.01e-01 98.1% 65.9%
3184697 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 52.0 4.76e-01 100.0% 87.8%
4938704 101.1.2.750 alpha arrays › HTH › HTH › winged helix domain › PF27374 0.62 50.0 4.26e-01 100.0% 66.0%
4028610 101.1.2.123 alpha arrays › HTH › HTH › winged helix domain › Paf67 0.62 52.0 4.29e-01 100.0% 84.8%
5069904 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.61 53.0 3.94e-01 98.1% 65.0%
5027864 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.61 49.0 4.57e-01 100.0% 72.0%
3948523 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 49.0 4.65e-01 98.1% 98.6%
3729360 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 50.0 4.37e-01 100.0% 98.9%
3995694 101.1.2.79 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_I_A49 0.60 48.0 3.65e-01 100.0% 39.4%
5041027 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 49.0 4.19e-01 98.1% 63.2%
3794482 101.1.2.79 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_I_A49 0.60 48.0 3.76e-01 100.0% 42.1%
2469865 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.60 52.0 4.29e-01 98.1% 69.8%
5048462 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 47.0 3.79e-01 98.1% 59.2%
3666427 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.59 47.0 3.59e-01 100.0% 43.2%
5070420 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.59 52.0 3.86e-01 100.0% 52.1%
3284645 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.58 49.0 3.57e-01 100.0% 38.7%
5025354 2003.1.5.8 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Ubie_methyltran 0.58 48.0 3.36e-01 100.0% 48.8%
5064533 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 47.0 4.43e-01 98.1% 81.4%
4933792 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.58 49.0 4.28e-01 94.3% 90.0%
4955393 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 48.0 4.66e-01 100.0% 98.3%
3838126 2003.1.5.46 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS 0.57 48.0 3.30e-01 96.2% 40.0%
None 0.57 47.0 3.26e-01 96.2% 39.5%
None 0.56 47.0 3.22e-01 96.2% 39.5%
5065253 101.1.2.78 alpha arrays › HTH › HTH › winged helix domain › AlkZ-like 0.56 46.0 4.16e-01 100.0% 75.0%
4188749 101.1.2.20 alpha arrays › HTH › HTH › winged helix domain › Arg_repressor 0.56 44.0 4.04e-01 98.1% 77.5%
4937831 2003.1.5.42 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_21 0.55 45.0 2.95e-01 96.2% 46.0%
4982079 213.1.1.25 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 0.55 44.0 3.22e-01 98.1% 86.7%
3988441 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.54 47.0 3.44e-01 98.1% 79.3%
3340251 246.3.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.54 45.0 3.02e-01 100.0% 24.6%
5029251 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.52 43.0 3.81e-01 98.1% 81.2%
4993637 7516.1.1.23 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › DUF2064 0.52 43.0 2.84e-01 96.2% 30.0%
3172479 4012.4.1.0 a+b two layers › SSHS domain › DPAGT1 insertion domain › DPAGT1 insertion domain 0.52 37.0 3.89e-01 81.1% 95.6%
3772566 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.51 36.0 3.33e-01 79.2% 69.3%