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KR131710.1__AKC57525.1__HMPREF1993_00032__00031

Bact-Vir

KR131710.1__AKC57525.1__HMPREF1993_00032__00031

Identity

Accession:
KR131710 ↗
Kingdom:
phage

Quality

87.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-62
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ggpA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.74 52.0 3.66e-01 100.0% 25.5%
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.72 42.0 3.93e-01 96.2% 46.9%
2qcuB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.72 49.0 3.19e-01 71.2% 49.8%
5hkeA01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.70 51.0 3.18e-01 78.8% 89.6%
1l0qA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.70 50.0 3.09e-01 76.9% 88.0%
1itxA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.68 47.0 4.23e-01 96.2% 52.1%
1wiiA01 2.20.25.190 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.68 44.0 4.21e-01 92.3% 56.5%
1twfI01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.67 47.0 4.95e-01 100.0% 84.8%
5kzwA02 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.67 54.0 3.68e-01 100.0% 42.2%
6iw6A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.66 53.0 4.28e-01 92.3% 87.0%
6inxA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.65 43.0 4.07e-01 96.2% 55.4%
3arxA03 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.62 45.0 3.90e-01 94.2% 48.8%
1npeA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.60 46.0 2.95e-01 80.8% 21.3%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.60 42.0 3.58e-01 75.0% 78.9%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 40.0 3.99e-01 94.2% 66.1%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 41.0 4.31e-01 96.2% 80.9%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.59 45.0 2.84e-01 100.0% 14.0%
3cz8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.59 43.0 4.19e-01 96.2% 71.9%
1e6vC00 3.90.320.20 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › Methyl-coenzyme M reductase, gamma subunit 0.59 48.0 3.23e-01 100.0% 71.8%
4qunA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.59 52.0 3.25e-01 100.0% 37.1%
2lssA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 36.0 3.38e-01 96.2% 45.7%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 50.0 3.88e-01 100.0% 63.6%
3facA00 2.170.150.70 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › 0.58 46.0 3.81e-01 98.1% 72.5%
4hdoA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 51.0 4.20e-01 100.0% 75.0%
1f1sA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.57 41.0 3.59e-01 78.8% 52.4%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 39.0 4.00e-01 94.2% 77.6%
5dezA03 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.56 48.0 4.31e-01 98.1% 97.3%
2zwrB00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.56 45.0 3.07e-01 92.3% 47.3%
3oa5A01 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.56 46.0 3.56e-01 98.1% 97.7%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 42.0 3.55e-01 86.5% 70.0%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 47.0 4.40e-01 98.1% 81.5%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 47.0 4.18e-01 98.1% 70.7%
1w9pA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.54 44.0 4.24e-01 96.2% 100.0%
1owqA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.54 45.0 4.13e-01 94.2% 100.0%
4dwsA01 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.53 42.0 3.42e-01 98.1% 90.2%
7xpkA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.53 35.0 2.70e-01 71.2% 55.2%
4mnkA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.53 44.0 4.14e-01 96.2% 100.0%
3lppA02 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.52 39.0 2.72e-01 90.4% 94.1%
2vseA04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 44.0 3.28e-01 100.0% 67.8%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.52 35.0 3.59e-01 96.2% 74.5%
2vseA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 42.0 3.13e-01 94.2% 62.7%
1zxuA00 2.40.160.200 Mainly Beta › Beta Barrel › Porin › LURP1-related 0.51 44.0 3.17e-01 100.0% 80.2%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 42.0 3.89e-01 96.2% 84.1%
3jbtA05 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 41.0 2.61e-01 100.0% 31.6%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 38.0 3.63e-01 96.2% 71.0%
2q1fA04 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.50 38.0 2.86e-01 86.5% 59.0%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3331569 375.1.1.31 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.79 53.0 5.21e-01 94.2% 65.5%
3414499 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.79 44.0 5.43e-01 80.8% 96.7%
4930465 4294.1.1.0 few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.75 50.0 4.80e-01 92.3% 60.0%
3955707 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.75 65.0 5.57e-01 100.0% 74.1%
5035450 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.74 59.0 4.80e-01 98.1% 47.4%
4980041 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.74 52.0 5.51e-01 96.2% 86.7%
4943339 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.74 60.0 4.82e-01 100.0% 47.0%
5038830 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.73 58.0 4.61e-01 98.1% 45.0%
4963287 375.1.1.334 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › HVO_0758 0.72 50.0 5.00e-01 100.0% 70.9%
5033222 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.71 56.0 4.45e-01 100.0% 42.9%
4948153 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 45.0 4.08e-01 90.4% 48.6%
3504732 12.3.1.19 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 0.70 58.0 3.84e-01 100.0% 40.4%
3646226 375.1.1.31 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.69 46.0 3.98e-01 92.3% 43.8%
6500 284.2.1.1 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain › Glyco_hydro_18 0.69 48.0 4.31e-01 98.1% 52.1%
None 0.69 46.0 2.87e-01 100.0% 12.1%
3208203 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.69 46.0 4.59e-01 96.2% 67.3%
4025894 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 63.0 4.82e-01 100.0% 86.2%
4937515 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.69 61.0 5.02e-01 98.1% 91.1%
3189994 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.68 48.0 4.05e-01 100.0% 43.3%
3482420 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 37.0 4.42e-01 76.9% 93.1%
4202852 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.67 59.0 4.68e-01 98.1% 81.0%
3985807 375.1.1.130 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_Tnp_IS1 0.67 45.0 4.77e-01 94.2% 82.2%
3505640 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.67 47.0 4.55e-01 100.0% 65.0%
3982469 375.1.1.130 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_Tnp_IS1 0.66 44.0 4.72e-01 94.2% 90.0%
4463837 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.66 59.0 4.63e-01 100.0% 77.1%
3500033 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 46.0 4.75e-01 100.0% 80.0%
4960549 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 43.0 4.39e-01 94.2% 72.0%
3729161 375.1.1.31 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.64 42.0 3.57e-01 90.4% 38.9%
4028185 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.63 44.0 4.55e-01 100.0% 80.0%
210920 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.63 47.0 4.08e-01 98.1% 50.6%
5030311 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 46.0 4.55e-01 98.1% 76.4%
3268906 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.63 47.0 3.97e-01 80.8% 58.4%
3241268 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.62 51.0 3.45e-01 100.0% 37.0%
3428912 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.62 45.0 2.75e-01 78.8% 14.5%
3980349 375.1.1.140 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › FdhE_central 0.61 45.0 4.58e-01 98.1% 84.0%
5036656 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 47.0 4.50e-01 100.0% 73.3%
4024148 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.60 39.0 4.35e-01 92.3% 100.0%
3356611 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.60 43.0 4.31e-01 94.2% 76.4%
3980218 708.1.2.6 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › GFA 0.60 47.0 3.74e-01 96.2% 71.2%
3217951 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 52.0 3.73e-01 100.0% 50.7%
3902761 355.1.1.0 few secondary structure elements › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like 0.59 43.0 2.76e-01 80.8% 26.5%
3404585 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.59 34.0 3.49e-01 76.9% 60.0%
3935682 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.58 35.0 3.44e-01 76.9% 48.3%
943 220.1.1.47 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_16 0.58 50.0 4.10e-01 100.0% 77.0%
4942202 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.57 39.0 2.93e-01 73.1% 100.0%
3535268 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.57 39.0 3.25e-01 94.2% 38.9%
3890922 220.1.1.132 beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C 0.57 50.0 3.99e-01 100.0% 69.5%
4027092 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.56 41.0 3.26e-01 78.8% 85.5%
3547695 3470.1.1.0 extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain 0.56 32.0 3.65e-01 78.8% 93.3%
3251559 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 39.0 3.99e-01 96.2% 78.0%
3258610 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 41.0 3.59e-01 96.2% 52.5%
3241191 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 47.0 3.71e-01 100.0% 70.4%
4013690 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.55 49.0 4.81e-01 100.0% 94.5%
4986717 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 43.0 4.16e-01 100.0% 96.9%
3403173 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.54 34.0 3.81e-01 73.1% 94.3%
4986625 213.1.1.19 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › FR47 0.53 46.0 3.33e-01 100.0% 42.0%
4992167 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.51 42.0 2.40e-01 88.5% 19.8%
3219936 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.51 44.0 2.69e-01 100.0% 85.3%
4235146 129.1.1.2 alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 3HCDH 0.51 38.0 2.96e-01 90.4% 74.5%
3715229 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.50 36.0 3.62e-01 78.8% 81.8%