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KR131710.1__AKC57535.1__HMPREF1993_00042__00041
Bact-VirKR131710.1__AKC57535.1__HMPREF1993_00042__00041
Identity
- Accession:
- KR131710 ↗
- Kingdom:
- phage
Quality
78.4
mean pLDDT
Cluster
View cluster (166 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-16_21-47_68-153_292-314
Domain cluster:
rep: NC_062753.1__YP_010357483.1__M1M31_gp41__00041__D2-57_77-162_292-334
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bqwA01 | 3.15.30.10 | Alpha Beta › Super Roll › putative capsid protein of prophage fold › putative capsid protein of prophage domain like | 0.81 | 76.0 | 6.63e-01 | 100.0% | 93.8% |
| 1sqeA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 26.0 | 3.04e-01 | 70.5% | 54.5% |
| 2di8A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 22.0 | 2.67e-01 | 70.5% | 47.9% |
| 1vr4E00 | 3.30.110.70 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B | 0.54 | 32.0 | 3.96e-01 | 92.5% | 93.5% |
| 4bsjA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 26.0 | 2.79e-01 | 71.9% | 57.7% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2640765 | 2485.3.1.1 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_E | 0.86 | 77.0 | 5.58e-01 | 93.2% | 89.0% |
| 3949155 | 2485.3.1.11 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › SrpI-like | 0.64 | 56.0 | 4.57e-01 | 93.2% | 85.3% |
| 5080806 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.62 | 54.0 | 4.30e-01 | 93.2% | 93.7% |
| 4338725 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.54 | 36.0 | 4.05e-01 | 82.2% | 87.8% |
| 4164698 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.53 | 34.0 | 3.85e-01 | 88.4% | 86.4% |
| 4616711 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.52 | 36.0 | 3.84e-01 | 82.2% | 82.4% |
D2
high
residues 158-275_323-331
Domain cluster:
rep: NC_062753.1__YP_010357483.1__M1M31_gp41__00041__D163-291_335-364
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03864.23 best | Phage_cap_E | 31.9 | 1.00e-07 | 100.0% | 36.3% |
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bqwA02 | 3.30.1930.10 | Alpha Beta › 2-Layer Sandwich › capsid protein of prophage fold › capsid protein of prophage domain | 0.85 | 81.0 | 7.84e-01 | 100.0% | 94.2% |
| 6xgpB01 | 3.30.1930.10 | Alpha Beta › 2-Layer Sandwich › capsid protein of prophage fold › capsid protein of prophage domain | 0.83 | 79.0 | 7.75e-01 | 100.0% | 97.8% |
| 2e0zC03 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.77 | 54.0 | 6.17e-01 | 100.0% | 94.8% |
| 7mh2A01 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.74 | 53.0 | 6.05e-01 | 100.0% | 100.0% |
| 1ohgA02 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.70 | 54.0 | 5.92e-01 | 100.0% | 96.2% |
| 1yueA03 | 3.30.2320.40 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › | 0.70 | 60.0 | 6.18e-01 | 100.0% | 95.0% |
| 2pk8A00 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.69 | 48.0 | 5.51e-01 | 92.1% | 96.8% |
| 4rlqA02 | 3.40.50.12820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.65 | 32.0 | 4.01e-01 | 86.6% | 77.3% |
| 3bjqA00 | 3.90.1690.10 | Alpha Beta › Alpha-Beta Complex › phage-related protein like fold › phage-related protein like domain | 0.65 | 60.0 | 4.52e-01 | 100.0% | 54.7% |
| 3p8aA02 | 2.60.40.4320 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 36.0 | 4.19e-01 | 76.4% | 92.2% |
| 3k12D00 | 3.30.1330.40 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like | 0.52 | 39.0 | 4.08e-01 | 93.7% | 85.0% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1005479 | 2485.3.1.1 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_E | 0.85 | 81.0 | 5.67e-01 | 100.0% | 51.9% |
| 2640765 | 2485.3.1.1 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_E | 0.77 | 73.0 | 5.10e-01 | 100.0% | 53.5% |
| 333200 | 2485.3.1.1 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_E | 0.66 | 61.0 | 4.56e-01 | 100.0% | 55.4% |
| 4988094 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.64 | 59.0 | 4.64e-01 | 100.0% | 58.0% |
| 5083777 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.61 | 57.0 | 4.26e-01 | 100.0% | 46.3% |
| 2995627 | 2485.3.1.7 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Major_capside | 0.61 | 57.0 | 4.25e-01 | 100.0% | 51.3% |
| 2989363 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.61 | 56.0 | 4.17e-01 | 100.0% | 52.6% |
| 3965498 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.60 | 56.0 | 4.08e-01 | 100.0% | 50.6% |
| 2443966 | 2485.3.1.1 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_E | 0.60 | 54.0 | 3.80e-01 | 100.0% | 48.7% |
| 4884207 | 2485.3.1.7 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Major_capside | 0.59 | 55.0 | 4.16e-01 | 100.0% | 50.3% |
| 1877546 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.59 | 55.0 | 4.09e-01 | 100.0% | 51.7% |
| 2989356 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.59 | 54.0 | 4.09e-01 | 100.0% | 52.4% |
| 2639625 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.58 | 54.0 | 4.12e-01 | 100.0% | 50.0% |
| 3603036 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.58 | 54.0 | 4.19e-01 | 100.0% | 51.8% |
| 2989506 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.56 | 52.0 | 3.88e-01 | 100.0% | 58.0% |
| 2129825 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.55 | 51.0 | 3.90e-01 | 100.0% | 50.4% |
| 3401943 | 2004.1.1.250 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd | 0.51 | 45.0 | 3.47e-01 | 100.0% | 88.3% |