←Back to structures
KR131711.1__AKC57566.1__HMPREF1994_00007__00007
Bact-VirKR131711.1__AKC57566.1__HMPREF1994_00007__00007
Identity
- Accession:
- KR131711 ↗
- Kingdom:
- phage
Quality
81.0
mean pLDDT
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-81
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2bseA00 | 2.60.40.1830 | Mainly Beta › Sandwich › Immunoglobulin-like › Phage tail base-plate Siphoviridae RBP, head domain | 0.81 | 74.0 | 6.60e-01 | 100.0% | 72.9% |
| 2f0cA02 | 2.60.40.1830 | Mainly Beta › Sandwich › Immunoglobulin-like › Phage tail base-plate Siphoviridae RBP, head domain | 0.80 | 72.0 | 6.53e-01 | 100.0% | 74.0% |
| 4p25D01 | 2.40.510.10 | Mainly Beta › Beta Barrel › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Positive stranded ssRNA viruses | 0.67 | 57.0 | 4.41e-01 | 100.0% | 91.8% |
| 6xw5A01 | 2.40.510.10 | Mainly Beta › Beta Barrel › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Positive stranded ssRNA viruses | 0.65 | 54.0 | 4.23e-01 | 92.4% | 98.8% |
| 2vbkA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.60 | 52.0 | 3.23e-01 | 100.0% | 15.9% |
| 2j1aA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.59 | 50.0 | 4.21e-01 | 98.7% | 61.0% |
| 4apxB02 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.58 | 49.0 | 4.43e-01 | 100.0% | 78.8% |
| 2v31A01 | 2.40.30.180 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Ubiquitin-activating enzyme E1, FCCH domain | 0.58 | 49.0 | 4.68e-01 | 98.7% | 85.6% |
| 4psrA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.57 | 48.0 | 4.29e-01 | 98.7% | 66.4% |
| 4mgqA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.57 | 49.0 | 4.10e-01 | 100.0% | 57.7% |
| 3zn6A02 | 2.60.40.3410 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 48.0 | 4.72e-01 | 98.7% | 100.0% |
| 1v0fB03 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.56 | 48.0 | 4.76e-01 | 100.0% | 97.6% |
| 1ahsA00 | 2.60.120.170 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 46.0 | 4.13e-01 | 100.0% | 98.4% |
| 1vw3C01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.55 | 47.0 | 4.10e-01 | 100.0% | 71.8% |
| 1zc3B00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 37.0 | 3.41e-01 | 70.9% | 88.1% |
| 4txwA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.55 | 45.0 | 3.78e-01 | 98.7% | 84.9% |
| 7zkpA01 | 2.60.120.430 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin | 0.54 | 46.0 | 3.63e-01 | 100.0% | 71.7% |
| 3eqeA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 40.0 | 3.29e-01 | 100.0% | 41.0% |
| 1g7sA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.54 | 45.0 | 4.20e-01 | 98.7% | 88.9% |
| 5xrkA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 45.0 | 3.86e-01 | 100.0% | 91.5% |
| 2v5yA05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 42.0 | 4.03e-01 | 94.9% | 76.3% |
| 1upsB01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 44.0 | 3.18e-01 | 100.0% | 66.8% |
| 2wsuA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.50 | 41.0 | 3.55e-01 | 97.5% | 88.5% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1156585 | 5092.1.1.4 ↗ | beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › Caudo_bapla_RBP | 0.81 | 74.0 | 6.49e-01 | 100.0% | 69.0% |
| 961561 | 5092.1.1.4 ↗ | beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › Caudo_bapla_RBP | 0.81 | 72.0 | 6.59e-01 | 100.0% | 74.8% |
| 184925 | 11.21.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein › Tailspike_C | 0.63 | 51.0 | 5.23e-01 | 98.7% | 98.6% |
| 3988567 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.61 | 53.0 | 4.89e-01 | 100.0% | 99.0% |
| 5027524 | 11.1.4.23 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg | 0.61 | 45.0 | 4.29e-01 | 86.1% | 67.4% |
| 3581636 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 47.0 | 4.62e-01 | 92.4% | 81.1% |
| 3272034 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.58 | 41.0 | 2.80e-01 | 75.9% | 66.7% |
| 3726608 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.58 | 48.0 | 4.30e-01 | 96.2% | 80.0% |
| 5001414 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 48.0 | 4.52e-01 | 96.2% | 88.0% |
| 5055042 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.58 | 49.0 | 4.72e-01 | 100.0% | 94.7% |
| 1005556 | 10.2.1.65 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › VP17_central_barrel | 0.57 | 49.0 | 4.77e-01 | 98.7% | 98.9% |
| 1126319 | 12.1.1.25 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Fucosidase_C | 0.57 | 48.0 | 4.29e-01 | 98.7% | 66.4% |
| 3332862 | 1.1.7.35 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › E1_FCCH | 0.57 | 48.0 | 4.61e-01 | 98.7% | 87.4% |
| 3591572 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.57 | 47.0 | 4.20e-01 | 97.5% | 62.5% |
| 4053705 | 3504.2.1.1 ↗ | beta barrels › MutM N-terminal domain-like › N-terminal domain of MutM-like DNA repair proteins › N-terminal domain of MutM-like DNA repair proteins › Fapy_DNA_glyco | 0.56 | 42.0 | 3.53e-01 | 79.7% | 91.1% |
| 3804238 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.56 | 47.0 | 3.98e-01 | 100.0% | 80.7% |
| 3595571 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 46.0 | 4.45e-01 | 96.2% | 82.2% |
| 5070709 | 11.1.1.237 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG4 | 0.55 | 47.0 | 4.35e-01 | 100.0% | 76.2% |
| 4028878 | 929.1.1.0 ↗ | beta duplicates or obligate multimers › Resistin › Resistin › Resistin | 0.55 | 42.0 | 4.26e-01 | 100.0% | 89.3% |
| 3625926 | 604.3.1.11 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › DUF155 | 0.54 | 41.0 | 2.90e-01 | 81.0% | 32.2% |
| 5046040 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.54 | 46.0 | 4.28e-01 | 98.7% | 93.3% |
| 3938952 | 10.32.1.233 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GBD_Hemicentin | 0.54 | 45.0 | 4.33e-01 | 100.0% | 81.1% |
| 4970895 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 44.0 | 4.23e-01 | 96.2% | 86.3% |
| 3575535 | 1.1.7.113 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AAA_11, AAA_12 | 0.53 | 44.0 | 2.83e-01 | 98.7% | 20.0% |
| 4597423 | 12.2.1.4 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Hyaluronate lyase-like, C-terminal domain › Hyaluronate lyase-like, C-terminal domain › Vanin_C | 0.53 | 44.0 | 3.73e-01 | 100.0% | 56.7% |
| 3958603 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.52 | 44.0 | 4.46e-01 | 100.0% | 96.2% |
| 5013968 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.52 | 43.0 | 4.13e-01 | 98.7% | 82.7% |
| 5039150 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.52 | 44.0 | 3.99e-01 | 100.0% | 72.2% |
| 3961644 | 4261.1.1.1 ↗ | a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C | 0.52 | 37.0 | 3.72e-01 | 100.0% | 76.2% |
| 3230799 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 43.0 | 4.11e-01 | 100.0% | 84.2% |