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KR131711.1__AKC57581.1__HMPREF1994_00022__00022
Bact-VirKR131711.1__AKC57581.1__HMPREF1994_00022__00022
Identity
- Accession:
- KR131711 ↗
- Kingdom:
- phage
Quality
82.5
mean pLDDT
Cluster
View cluster (351 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-156
Domain cluster:
rep: NC_024392.1__YP_009045168.1__LP114_114__00113__D16-138
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF23961.2 best | Phage_tail_terminator_9 | 28.2 | 1.90e-06 | 81.8% | 55.6% |
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ec6A00 | 3.10.450.540 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.79 | 24.0 | 2.93e-01 | 71.4% | 39.4% |
| 4acvA00 | 3.30.2000.30 | Alpha Beta › 2-Layer Sandwich › STM4215-like › | 0.79 | 58.0 | 6.50e-01 | 96.8% | 96.6% |
| 2lyxA00 | 3.10.450.390 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Protein of unknown function DUF3889 | 0.78 | 30.0 | 3.98e-01 | 99.4% | 63.2% |
| 6toaF01 | 3.30.2000.30 | Alpha Beta › 2-Layer Sandwich › STM4215-like › | 0.77 | 62.0 | 6.68e-01 | 94.8% | 99.2% |
| 4r80A00 | 3.10.450.630 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.76 | 31.0 | 4.29e-01 | 96.1% | 75.0% |
| 1h2iA01 | 3.30.390.80 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 | 0.76 | 35.0 | 3.65e-01 | 94.8% | 46.6% |
| 2gjvA00 | 3.30.2000.10 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like | 0.75 | 61.0 | 6.46e-01 | 98.1% | 97.1% |
| 3fz2A00 | 3.30.70.1700 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phage minor tail protein U | 0.74 | 58.0 | 6.27e-01 | 94.8% | 97.7% |
| 4hudA01 | 3.30.2000.40 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser | 0.71 | 66.0 | 5.87e-01 | 98.1% | 81.9% |
| 2l25A00 | 3.30.2000.20 | Alpha Beta › 2-Layer Sandwich › STM4215-like › | 0.70 | 58.0 | 6.11e-01 | 96.1% | 96.5% |
| 2rjzA02 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.69 | 43.0 | 5.12e-01 | 96.1% | 94.9% |
| 1gkuB07 | 2.60.510.20 | Mainly Beta › Sandwich › EV matrix protein fold › | 0.65 | 29.0 | 3.55e-01 | 100.0% | 63.7% |
| 2f7vA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 38.0 | 4.41e-01 | 86.4% | 80.6% |
| 2p4bB02 | 3.30.200.100 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › MucB/RseB, C-terminal domain | 0.65 | 30.0 | 3.73e-01 | 93.5% | 68.4% |
| 7pkwA01 | 3.10.450.540 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 31.0 | 3.81e-01 | 96.1% | 72.8% |
| 1v4pC01 | 3.30.980.10 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 | 0.62 | 40.0 | 4.76e-01 | 96.8% | 93.5% |
| 1k8kD01 | 3.30.1460.20 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.61 | 38.0 | 3.84e-01 | 81.8% | 61.6% |
| 2je8A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 34.0 | 3.88e-01 | 76.0% | 76.4% |
| 3igqC00 | 2.70.170.10 | Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain | 0.58 | 41.0 | 3.92e-01 | 90.9% | 60.9% |
| 3butA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 34.0 | 3.73e-01 | 86.4% | 69.6% |
| 4divV01 | 2.40.30.200 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.57 | 46.0 | 4.82e-01 | 96.1% | 94.9% |
| 3pgbA01 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.54 | 44.0 | 3.10e-01 | 87.0% | 69.9% |
| 1z5bB03 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.54 | 36.0 | 3.73e-01 | 94.2% | 69.8% |
| 1qj8A00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.54 | 38.0 | 3.89e-01 | 100.0% | 75.0% |
| 3ub1A01 | 3.10.450.540 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 33.0 | 3.58e-01 | 100.0% | 70.6% |
| 1n9eA01 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.53 | 43.0 | 3.05e-01 | 87.7% | 70.8% |
| 3k7cA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 33.0 | 3.94e-01 | 97.4% | 90.7% |
| 2cjaA02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.52 | 47.0 | 3.71e-01 | 100.0% | 85.2% |
| 2n8xA00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.51 | 31.0 | 3.10e-01 | 98.7% | 55.4% |
| 1rtzA00 | 3.30.70.560 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK | 0.50 | 34.0 | 3.49e-01 | 92.2% | 69.1% |
| 3a7rA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.50 | 41.0 | 3.44e-01 | 84.4% | 79.0% |
| 1i78B00 | 2.40.128.90 | Mainly Beta › Beta Barrel › Lipocalin › OMPT-like | 0.50 | 44.0 | 3.68e-01 | 99.4% | 96.2% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5004177 | 304.124.1.3 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › DUF3168 | 0.82 | 64.0 | 7.05e-01 | 94.2% | 99.2% |
| 3948250 | 304.124.1.9 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Phage_tail_terminator_9 | 0.81 | 75.0 | 7.50e-01 | 98.1% | 96.1% |
| 3970985 | 304.124.1.9 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Phage_tail_terminator_9 | 0.81 | 70.0 | 7.36e-01 | 96.1% | 99.3% |
| 1807441 | 243.1.1.37 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TcpC-like_C | 0.79 | 24.0 | 2.93e-01 | 71.4% | 39.4% |
| 1871052 | 330.1.1.4 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 | 0.76 | 36.0 | 3.32e-01 | 94.8% | 36.7% |
| 4928893 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.73 | 64.0 | 6.57e-01 | 95.5% | 97.2% |
| 3585212 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.72 | 67.0 | 5.96e-01 | 100.0% | 94.0% |
| 3373981 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.71 | 36.0 | 3.15e-01 | 99.4% | 33.2% |
| 197096 | 310.3.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PilO | 0.71 | 44.0 | 4.74e-01 | 95.5% | 71.1% |
| None | — | 0.71 | 43.0 | 5.21e-01 | 93.5% | 93.0% | |
| 140398 | 304.124.1.4 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › DUF4128 | 0.70 | 58.0 | 6.11e-01 | 96.1% | 96.5% |
| 4954550 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.69 | 47.0 | 5.40e-01 | 95.5% | 93.9% |
| 3964535 | 310.3.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PilO | 0.65 | 43.0 | 4.93e-01 | 98.7% | 90.4% |
| 3441397 | 11.1.1.51 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 | 0.63 | 40.0 | 4.05e-01 | 89.0% | 64.7% |
| 3739026 | 314.1.1.28 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › GDH_2nd | 0.62 | 36.0 | 3.26e-01 | 81.2% | 40.5% |
| 3334409 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.62 | 36.0 | 3.59e-01 | 87.7% | 53.4% |
| 3823986 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.62 | 41.0 | 4.06e-01 | 87.7% | 63.0% |
| 3803659 | 11.1.1.51 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 | 0.60 | 42.0 | 4.19e-01 | 78.6% | 68.6% |
| 3466697 | 11.1.1.51 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 | 0.60 | 39.0 | 3.79e-01 | 77.3% | 58.3% |
| 3424042 | 11.1.1.51 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 | 0.58 | 38.0 | 3.84e-01 | 89.0% | 64.4% |
| 3588474 | 243.1.1.17 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TpcC | 0.57 | 34.0 | 3.90e-01 | 100.0% | 77.5% |
| 3469371 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 39.0 | 3.71e-01 | 89.0% | 58.4% |
| 5020942 | 7503.1.1.0 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain | 0.57 | 40.0 | 3.90e-01 | 96.8% | 65.3% |
| 3806405 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 39.0 | 3.66e-01 | 89.6% | 57.9% |
| 3437564 | 11.1.1.51 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 | 0.56 | 38.0 | 3.73e-01 | 77.3% | 64.2% |
| 5036898 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.55 | 38.0 | 3.92e-01 | 94.2% | 73.6% |
| 3636645 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.54 | 43.0 | 3.34e-01 | 83.1% | 48.6% |
| 4938899 | 11.1.1.1424 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7490 | 0.54 | 35.0 | 3.84e-01 | 87.0% | 79.2% |
| 3449994 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 40.0 | 3.77e-01 | 76.6% | 66.1% |
| 3817063 | 11.1.1.51 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 | 0.53 | 31.0 | 3.07e-01 | 76.0% | 55.0% |
| 4136159 | 7503.1.1.0 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain | 0.52 | 38.0 | 3.65e-01 | 98.1% | 66.9% |
| 3707804 | 11.1.5.59 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF4139 | 0.51 | 38.0 | 3.78e-01 | 87.0% | 74.4% |
| 3708605 | 11.1.5.59 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF4139 | 0.50 | 37.0 | 4.08e-01 | 76.0% | 94.4% |