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KR131711.1__AKC57605.1__HMPREF1994_00046__00046

Bact-Vir

KR131711.1__AKC57605.1__HMPREF1994_00046__00046

Identity

Accession:
KR131711 ↗
Kingdom:
phage

Quality

94.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-160
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03703.21 best bPH_2 35.5 1.30e-08 47.1% 78.2%
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.73 43.0 5.13e-01 89.8% 85.2%
3au4A04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.72 43.0 5.54e-01 91.1% 100.0%
4od4A02 1.20.120.1780 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › UbiA prenyltransferase 0.72 26.0 3.03e-01 70.7% 43.7%
3pvlA04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.71 44.0 5.51e-01 89.8% 99.0%
1mixA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.70 40.0 5.16e-01 86.0% 95.7%
3dcxA00 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.70 41.0 4.74e-01 86.0% 78.6%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.69 39.0 5.15e-01 84.1% 100.0%
3ml4A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.69 41.0 5.13e-01 86.6% 93.0%
3b77A01 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.69 34.0 4.15e-01 77.1% 73.0%
4gzuA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 42.0 4.37e-01 87.9% 66.0%
1iipA02 1.10.150.160 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.66 37.0 4.87e-01 93.0% 100.0%
1zsqA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 41.0 5.12e-01 85.4% 99.0%
1eazA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 42.0 5.15e-01 87.9% 98.1%
1wcrA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.65 31.0 3.89e-01 73.2% 70.9%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 43.0 4.85e-01 89.8% 86.8%
1z87A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 41.0 5.02e-01 87.9% 100.0%
1aqcB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 46.0 5.29e-01 92.4% 98.4%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 40.0 4.68e-01 86.0% 100.0%
4ioyX01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.57 44.0 4.87e-01 87.3% 97.7%
1jgcA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.57 37.0 3.73e-01 94.3% 64.4%
4cmyA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.55 37.0 3.67e-01 96.2% 65.6%
4wj7D00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 42.0 4.70e-01 84.7% 100.0%
2ib0A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.54 33.0 3.61e-01 91.7% 71.1%
2cy5A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 43.0 4.75e-01 87.9% 99.2%
1j30A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.54 29.0 3.09e-01 74.5% 58.9%
3zc0D00 1.20.58.2140 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 38.0 3.59e-01 77.1% 100.0%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3290954 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.90 54.0 6.96e-01 86.6% 100.0%
4974630 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.88 51.0 6.50e-01 87.9% 92.0%
4936800 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.87 53.0 6.29e-01 96.2% 86.4%
4937035 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.87 71.0 7.44e-01 94.9% 91.7%
4936961 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.86 47.0 6.38e-01 89.2% 100.0%
5039031 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.85 50.0 6.03e-01 86.6% 84.5%
5066631 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.84 50.0 6.09e-01 87.3% 88.6%
4967706 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.84 64.0 6.89e-01 86.0% 91.0%
5062759 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.84 50.0 6.29e-01 86.6% 94.0%
4963673 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.84 54.0 6.47e-01 92.4% 93.6%
4936963 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.81 44.0 5.94e-01 86.0% 98.8%
4964806 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.81 71.0 7.05e-01 100.0% 90.0%
5001552 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.80 44.0 5.68e-01 85.4% 90.5%
3956055 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.79 55.0 6.45e-01 86.0% 100.0%
3954531 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.77 47.0 5.89e-01 75.8% 100.0%
4984268 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.77 48.0 5.91e-01 86.6% 98.0%
4941253 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.76 48.0 5.95e-01 86.6% 100.0%
5043209 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.74 55.0 5.68e-01 89.8% 80.0%
4041551 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.74 55.0 6.26e-01 88.5% 100.0%
3779393 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.73 48.0 5.24e-01 93.0% 80.0%
3234621 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.72 49.0 5.30e-01 94.9% 80.7%
3275324 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.72 49.0 5.25e-01 97.5% 80.0%
3266298 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.71 48.0 5.19e-01 93.0% 79.9%
3479736 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 48.0 5.76e-01 93.0% 99.1%
3764969 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 44.0 5.45e-01 88.5% 95.2%
3478706 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.70 48.0 4.91e-01 93.6% 72.0%
3911245 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 48.0 5.70e-01 98.1% 100.0%
3407757 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.70 46.0 5.08e-01 96.8% 80.8%
3954510 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 48.0 5.56e-01 86.0% 99.1%
3173029 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 44.0 4.16e-01 91.7% 54.2%
3594546 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 40.0 4.88e-01 85.4% 90.5%
1141835 220.1.1.17 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_1 0.66 40.0 4.54e-01 87.9% 78.5%
4993041 150.1.1.3 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin 0.66 29.0 4.02e-01 74.5% 81.2%
3273237 220.1.1.26 beta barrels › PH domain-like › PH domain-like › PH domain-like › Vps36_ESCRT-II 0.65 43.0 4.76e-01 94.3% 82.4%
4638994 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.65 46.0 5.19e-01 86.0% 97.4%
3383768 220.1.1.80 beta barrels › PH domain-like › PH domain-like › PH domain-like › RME-8_N 0.65 41.0 4.19e-01 86.6% 65.3%
3251857 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.65 42.0 4.48e-01 92.4% 74.8%
3917637 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.65 45.0 4.65e-01 92.4% 74.7%
3614844 220.1.1.15 beta barrels › PH domain-like › PH domain-like › PH domain-like › BBL5 0.64 44.0 4.64e-01 91.7% 77.1%
3685219 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 44.0 4.65e-01 88.5% 76.6%
3183393 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.64 24.0 3.13e-01 94.9% 58.9%
3577911 220.1.1.15 beta barrels › PH domain-like › PH domain-like › PH domain-like › BBL5 0.63 44.0 4.61e-01 93.0% 76.6%
3178261 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 43.0 4.79e-01 90.4% 88.0%
4950190 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.62 50.0 5.35e-01 84.1% 100.0%
4931496 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.62 45.0 5.09e-01 84.7% 98.3%
3286721 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.62 46.0 3.92e-01 75.8% 92.2%
3404941 220.1.1.15 beta barrels › PH domain-like › PH domain-like › PH domain-like › BBL5 0.62 46.0 4.49e-01 94.9% 70.0%
3289908 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.61 48.0 5.28e-01 84.7% 100.0%
3598224 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 38.0 4.35e-01 86.6% 82.4%
4950191 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.59 43.0 4.73e-01 86.0% 93.6%
3903067 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 40.0 4.51e-01 88.5% 87.2%
3223154 220.1.1.176 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7778 0.59 41.0 4.30e-01 87.3% 78.6%
3796013 220.1.1.176 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7778 0.58 39.0 4.29e-01 86.0% 83.1%
3221276 220.1.1.9 beta barrels › PH domain-like › PH domain-like › PH domain-like › Voldacs 0.57 43.0 4.68e-01 93.0% 90.4%
4032056 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.57 47.0 4.65e-01 86.6% 90.9%
3857490 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 39.0 4.34e-01 87.9% 87.2%
4965124 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 41.0 4.25e-01 91.1% 81.4%
3796020 220.1.1.26 beta barrels › PH domain-like › PH domain-like › PH domain-like › Vps36_ESCRT-II 0.56 41.0 4.47e-01 87.9% 88.9%
3555102 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 40.0 4.60e-01 86.6% 97.5%
3710253 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 40.0 4.28e-01 88.5% 88.1%
3791593 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 48.0 4.95e-01 94.9% 99.3%
5056592 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 33.0 2.53e-01 74.5% 27.5%
3483265 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 44.0 4.58e-01 89.8% 91.3%
3641909 220.1.1.9 beta barrels › PH domain-like › PH domain-like › PH domain-like › Voldacs 0.50 43.0 4.28e-01 90.4% 86.9%