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KR131712.1__AKC57630.1__HMPREF1994_00071__00003
Bact-VirKR131712.1__AKC57630.1__HMPREF1994_00071__00003
Identity
- Accession:
- KR131712 ↗
- Kingdom:
- phage
Quality
70.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-78
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2fwrA01 | 3.40.1170.30 | Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › | 0.76 | 53.0 | 6.03e-01 | 80.8% | 98.2% |
| 3devA02 | 3.10.310.30 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.73 | 50.0 | 4.39e-01 | 71.8% | 53.4% |
| 6bq9A02 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.70 | 48.0 | 4.58e-01 | 71.8% | 87.2% |
| 1jqgA01 | 3.30.70.340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Metallocarboxypeptidase-like | 0.64 | 46.0 | 4.39e-01 | 75.6% | 73.6% |
| 2douB01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.64 | 43.0 | 3.53e-01 | 70.5% | 49.7% |
| 1a79A02 | 3.40.1170.20 | Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › tRNA intron endonuclease, N-terminal domain | 0.63 | 51.0 | 5.30e-01 | 88.5% | 95.8% |
| 2af6A01 | 3.30.70.3180 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 53.0 | 4.56e-01 | 96.2% | 96.9% |
| 3nx3A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.63 | 42.0 | 3.55e-01 | 70.5% | 50.4% |
| 2fm8B00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.62 | 42.0 | 3.67e-01 | 70.5% | 72.8% |
| 3wgbC02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.62 | 42.0 | 4.14e-01 | 70.5% | 73.5% |
| 1i3pA00 | 2.60.250.10 | Mainly Beta › Sandwich › Baculovirus p35 › Baculovirus p35 | 0.58 | 47.0 | 3.28e-01 | 89.7% | 97.1% |
| 2wb6A00 | 3.90.1150.90 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.58 | 48.0 | 4.20e-01 | 96.2% | 60.5% |
| 1in0A01 | 3.30.70.860 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 40.0 | 4.17e-01 | 71.8% | 97.1% |
| 7k7jA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 41.0 | 3.72e-01 | 75.6% | 99.1% |
| 4fz2A01 | 3.40.1170.20 | Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › tRNA intron endonuclease, N-terminal domain | 0.57 | 47.0 | 4.76e-01 | 91.0% | 96.0% |
| 4wrnA02 | 2.60.40.3210 | Mainly Beta › Sandwich › Immunoglobulin-like › Zona pellucida, ZP-N domain | 0.56 | 42.0 | 3.93e-01 | 84.6% | 95.2% |
| 7essA01 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.55 | 44.0 | 3.73e-01 | 87.2% | 53.0% |
| 3s98A03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 44.0 | 4.16e-01 | 87.2% | 95.7% |
| 2x10A04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 42.0 | 3.91e-01 | 84.6% | 93.1% |
| 3nftA00 | 1.20.1710.10 | Mainly Alpha › Up-down Bundle › IpaD-like › IpaD-like | 0.54 | 38.0 | 2.66e-01 | 73.1% | 42.7% |
| 4xhpA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.54 | 44.0 | 3.44e-01 | 89.7% | 79.9% |
| 3sd2A01 | 2.60.40.3080 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 43.0 | 4.33e-01 | 87.2% | 98.7% |
| 3qt2B03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 42.0 | 3.96e-01 | 87.2% | 92.9% |
| 4d6gA03 | 2.60.220.10 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal | 0.53 | 36.0 | 3.09e-01 | 70.5% | 70.8% |
| 5j11C02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 41.0 | 3.85e-01 | 85.9% | 90.8% |
| 7ox5A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 40.0 | 3.72e-01 | 84.6% | 99.0% |
| 1fyhB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 40.0 | 3.78e-01 | 84.6% | 91.8% |
| 1egjA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 40.0 | 3.76e-01 | 85.9% | 94.1% |
| 3dxqA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 36.0 | 3.54e-01 | 87.2% | 67.5% |
| 4ewfA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.51 | 38.0 | 2.69e-01 | 82.1% | 64.2% |
| 2w2iC00 | 2.60.120.650 | Mainly Beta › Sandwich › Jelly Rolls › Cupin | 0.51 | 38.0 | 2.64e-01 | 84.6% | 76.8% |
| 4d7pA00 | 2.60.40.730 | Mainly Beta › Sandwich › Immunoglobulin-like › SOR catalytic domain | 0.50 | 40.0 | 3.73e-01 | 85.9% | 97.9% |
ECOD (52)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3533206 | 3696.1.1.1 ↗ | a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › HARP | 0.86 | 63.0 | 6.81e-01 | 75.6% | 96.9% |
| 4966680 | 3696.1.1.0 ↗ | a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related | 0.82 | 64.0 | 6.91e-01 | 82.1% | 98.5% |
| 4977810 | 3696.1.1.0 ↗ | a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related | 0.80 | 62.0 | 6.35e-01 | 85.9% | 85.3% |
| 4997049 | 3696.1.1.0 ↗ | a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related | 0.79 | 63.0 | 6.59e-01 | 87.2% | 92.9% |
| 4932042 | 3696.1.1.0 ↗ | a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related | 0.78 | 59.0 | 4.84e-01 | 83.3% | 45.7% |
| 185162 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.73 | 50.0 | 4.32e-01 | 71.8% | 51.2% |
| 5041345 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.73 | 58.0 | 5.81e-01 | 87.2% | 100.0% |
| 4033357 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.72 | 50.0 | 4.33e-01 | 71.8% | 53.4% |
| 4959522 | 241.9.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF1801 | 0.71 | 50.0 | 4.33e-01 | 73.1% | 47.5% |
| 4646162 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.71 | 50.0 | 5.36e-01 | 73.1% | 95.4% |
| 5064885 | 2004.1.1.120 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ResIII | 0.70 | 58.0 | 4.15e-01 | 92.3% | 79.6% |
| 4143106 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.68 | 46.0 | 4.85e-01 | 70.5% | 97.1% |
| 2132714 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.67 | 46.0 | 3.94e-01 | 71.8% | 52.8% |
| 5025092 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.65 | 46.0 | 4.71e-01 | 74.4% | 84.0% |
| 4930161 | 242.4.1.2 ↗ | a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central | 0.65 | 46.0 | 4.06e-01 | 74.4% | 50.9% |
| 4941492 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.65 | 45.0 | 5.02e-01 | 73.1% | 100.0% |
| 5040722 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.65 | 47.0 | 5.19e-01 | 78.2% | 100.0% |
| 3989273 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.65 | 44.0 | 3.91e-01 | 70.5% | 57.4% |
| 4983245 | 242.2.1.2 ↗ | a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_endo_N | 0.65 | 54.0 | 5.48e-01 | 91.0% | 97.3% |
| 4979253 | 241.9.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF1801 | 0.65 | 44.0 | 4.00e-01 | 73.1% | 50.9% |
| 4438611 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.64 | 44.0 | 3.92e-01 | 71.8% | 57.4% |
| 5033645 | 241.9.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like | 0.64 | 45.0 | 4.51e-01 | 74.4% | 83.7% |
| 4058615 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.63 | 43.0 | 3.87e-01 | 71.8% | 58.3% |
| 4098578 | 242.4.1.2 ↗ | a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central | 0.61 | 45.0 | 3.82e-01 | 78.2% | 56.9% |
| 5033301 | 242.2.1.2 ↗ | a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_endo_N | 0.61 | 50.0 | 5.11e-01 | 91.0% | 97.3% |
| 5078462 | 1075.1.2.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX | 0.60 | 45.0 | 3.15e-01 | 80.8% | 27.5% |
| 3730822 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.59 | 41.0 | 3.60e-01 | 73.1% | 57.5% |
| 4935566 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.58 | 40.0 | 3.57e-01 | 71.8% | 54.8% |
| 146926 | 3066.1.1.0 ↗ | 0.58 | 48.0 | 4.48e-01 | 96.2% | 72.6% | |
| 3372418 | 2484.1.1.39 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Fumble | 0.58 | 46.0 | 3.59e-01 | 85.9% | 52.7% |
| 4052120 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.58 | 46.0 | 4.05e-01 | 88.5% | 78.3% |
| 3685122 | 4099.1.1.5 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Csm1 | 0.58 | 40.0 | 3.30e-01 | 71.8% | 49.6% |
| 5068670 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.57 | 39.0 | 3.51e-01 | 70.5% | 55.0% |
| 3354328 | 101.1.10.4 ↗ | alpha arrays › HTH › HTH › Cyclin-like › RB_B | 0.57 | 45.0 | 3.55e-01 | 88.5% | 53.1% |
| 3627119 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.55 | 31.0 | 3.10e-01 | 76.9% | 47.5% |
| 3607656 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.55 | 40.0 | 3.78e-01 | 76.9% | 80.0% |
| 3709334 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.55 | 40.0 | 3.76e-01 | 76.9% | 78.9% |
| 5068166 | 242.4.1.2 ↗ | a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central | 0.55 | 48.0 | 3.85e-01 | 97.4% | 58.1% |
| 5056756 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.54 | 42.0 | 3.95e-01 | 84.6% | 74.0% |
| 4590367 | 242.4.1.2 ↗ | a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central | 0.54 | 48.0 | 4.28e-01 | 98.7% | 77.3% |
| 4968640 | 242.4.1.0 ↗ | a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain | 0.54 | 47.0 | 4.26e-01 | 100.0% | 80.0% |
| 4666956 | 242.4.1.0 ↗ | a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain | 0.54 | 48.0 | 4.36e-01 | 100.0% | 84.8% |
| 3364265 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.53 | 38.0 | 3.32e-01 | 74.4% | 58.5% |
| 5081203 | 242.4.1.2 ↗ | a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central | 0.52 | 46.0 | 3.78e-01 | 98.7% | 57.2% |
| 4354139 | 242.4.1.2 ↗ | a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central | 0.52 | 46.0 | 4.19e-01 | 98.7% | 81.0% |
| 3620948 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 40.0 | 3.22e-01 | 82.1% | 60.4% |
| 5055051 | 242.4.1.2 ↗ | a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central | 0.52 | 45.0 | 4.13e-01 | 97.4% | 75.2% |
| 4933147 | 242.4.1.2 ↗ | a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central | 0.51 | 46.0 | 4.18e-01 | 100.0% | 76.2% |
| 4325854 | 242.4.1.2 ↗ | a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central | 0.51 | 46.0 | 4.09e-01 | 100.0% | 81.8% |
| 4982880 | 242.4.1.0 ↗ | a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain | 0.51 | 46.0 | 3.55e-01 | 100.0% | 54.7% |
| 4972931 | 220.1.1.321 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF4429 | 0.50 | 41.0 | 3.55e-01 | 91.0% | 82.4% |
| None | — | 0.50 | 39.0 | 3.02e-01 | 89.7% | 63.9% |