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KR136259.1__AKG94200.1__P12002L_0026__00026

Bact-Vir

KR136259.1__AKG94200.1__P12002L_0026__00026

Identity

Accession:
KR136259 ↗
Kingdom:
phage

Quality

56.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Incheonvirus› Polaribacter_phage_P12002L

TaxID: 1647386

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 248-400
PDB
Domain cluster: rep: BK061476.1__DBA08236.1__X__00008__D134-245
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF20155.5 best TMP_3 91.8 6.50e-26 99.4% 67.7%
D2 medium residues 1-192
PDB
D3 medium residues 495-585
PDB
D4 medium residues 609-726
PDB
D5 medium residues 727-788
PDB
D6 medium residues 789-866
PDB
D7 medium residues 1003-1063
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4b6wA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.72 51.0 4.57e-01 75.4% 94.2%
3ffjA04 2.60.40.4040 Mainly Beta › Sandwich › Immunoglobulin-like › 0.67 53.0 4.22e-01 88.5% 84.3%
5e50A01 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.67 48.0 4.12e-01 78.7% 47.0%
3kptB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 48.0 4.07e-01 78.7% 63.9%
2i45D00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.65 46.0 4.01e-01 77.0% 48.5%
7sqxA02 3.30.70.2150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 44.0 3.86e-01 72.1% 96.9%
5zi7A04 2.60.40.1840 Mainly Beta › Sandwich › Immunoglobulin-like › Aminopeptidase N, middle-beta domain 0.65 47.0 4.19e-01 77.0% 79.3%
3hqxA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.65 44.0 3.76e-01 77.0% 41.9%
3fn9A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 46.0 3.78e-01 78.7% 76.7%
3afgA03 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.64 45.0 3.86e-01 75.4% 60.8%
5c17A00 3.30.450.410 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.64 49.0 3.45e-01 86.9% 31.1%
4uzgA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 45.0 3.39e-01 75.4% 59.6%
1z9mA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 45.0 3.89e-01 78.7% 77.9%
2hyxA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.62 42.0 3.39e-01 72.1% 57.3%
4gioA00 2.60.40.3230 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 43.0 3.77e-01 73.8% 80.2%
1sfpA00 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.62 46.0 3.86e-01 82.0% 50.5%
2fqpA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 44.0 3.84e-01 75.4% 75.8%
6m3aA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 43.0 4.25e-01 75.4% 89.4%
4nzdB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 44.0 3.83e-01 80.3% 81.8%
1cduA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 43.0 3.74e-01 77.0% 86.7%
5c3pD00 2.60.120.330 Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.60 41.0 2.70e-01 73.8% 28.1%
2lrgA00 2.60.60.60 Mainly Beta › Sandwich › Lipoxygenase-1 › 0.60 42.0 3.44e-01 77.0% 87.3%
2h6cA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 47.0 3.86e-01 95.1% 65.1%
6qe7A01 3.90.182.10 Alpha Beta › Alpha-Beta Complex › Toxin - Anthrax Protective Antigen; domain 1 › Toxin - Anthrax Protective Antigen;domain 1 0.59 43.0 3.38e-01 78.7% 92.6%
1akpA00 2.60.40.230 Mainly Beta › Sandwich › Immunoglobulin-like › Neocarzinostatin-like 0.59 42.0 3.56e-01 78.7% 84.2%
1p8jA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 41.0 3.26e-01 75.4% 78.0%
1wgyA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 39.0 3.74e-01 72.1% 76.3%
4ofyD01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 41.0 3.57e-01 78.7% 84.5%
1k42A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 41.0 3.11e-01 82.0% 95.2%
2lw3A00 2.60.40.2880 Mainly Beta › Sandwich › Immunoglobulin-like › MmpS1-5, C-terminal soluble domain 0.56 38.0 3.50e-01 73.8% 60.0%
5fjqA00 2.70.50.50 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › chitin-binding protein cbp21 0.56 40.0 3.01e-01 78.7% 48.3%
3zm8A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 38.0 3.12e-01 73.8% 87.4%
4aefA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 39.0 3.51e-01 78.7% 73.7%
1j3qB00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 45.0 3.36e-01 98.4% 48.6%
1fxzA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 46.0 3.45e-01 96.7% 53.7%
7uzsX03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 38.0 3.16e-01 73.8% 82.6%
3w42A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.53 41.0 3.04e-01 91.8% 40.2%
2d93A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 41.0 3.38e-01 91.8% 64.9%
5wxuA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 45.0 3.33e-01 96.7% 53.7%
5oduA00 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.52 41.0 3.34e-01 88.5% 65.3%
4apmA01 3.50.4.10 Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor 0.52 37.0 3.24e-01 78.7% 72.8%
2vdrB02 2.60.40.1510 Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 3 0.52 36.0 2.74e-01 73.8% 32.0%
5jtwA03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 38.0 3.11e-01 83.6% 81.1%
5ja1B00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.50 38.0 3.79e-01 86.9% 80.3%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3892776 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.73 52.0 4.24e-01 75.4% 50.4%
5039912 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.73 52.0 4.21e-01 75.4% 48.7%
3928254 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.72 51.0 4.15e-01 75.4% 52.2%
4382620 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.72 51.0 4.42e-01 75.4% 58.9%
3479775 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.72 51.0 4.41e-01 75.4% 64.2%
3263574 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.71 50.0 4.39e-01 73.8% 64.4%
1948618 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.71 50.0 4.18e-01 75.4% 50.9%
3622115 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.71 50.0 3.67e-01 75.4% 40.6%
4946205 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.71 50.0 4.50e-01 75.4% 62.4%
3411480 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.70 50.0 3.68e-01 75.4% 35.0%
4352479 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.70 50.0 4.12e-01 75.4% 55.5%
3414212 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.70 49.0 4.05e-01 75.4% 50.4%
3480786 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.70 49.0 3.67e-01 75.4% 38.7%
3894892 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.70 49.0 4.09e-01 75.4% 50.9%
3783891 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.70 49.0 4.03e-01 75.4% 49.6%
3475565 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.70 49.0 4.29e-01 75.4% 65.3%
5005781 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.70 49.0 4.15e-01 75.4% 48.6%
4648192 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.70 49.0 4.03e-01 75.4% 44.3%
3489033 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.70 49.0 3.75e-01 75.4% 38.6%
4557440 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.69 49.0 4.13e-01 75.4% 54.3%
3266260 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 44.0 4.28e-01 72.1% 58.6%
5032460 10.1.2.180 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › EMP24_GP25L 0.68 48.0 4.41e-01 75.4% 68.8%
3386406 10.32.1.89 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Ape1_N 0.67 48.0 3.76e-01 77.0% 40.7%
4640166 11.1.1.856 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › RodZ_C 0.67 48.0 4.40e-01 78.7% 85.9%
3433491 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.67 47.0 3.92e-01 75.4% 53.6%
3611129 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.66 46.0 3.88e-01 75.4% 60.9%
3233159 10.4.1.9 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB_2 0.65 47.0 3.90e-01 77.0% 48.2%
5026423 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.65 46.0 3.89e-01 75.4% 57.1%
1933306 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.64 45.0 4.13e-01 75.4% 63.9%
350441 3249.1.1.1 ↗ beta sandwiches › beta-sandwich domain in YqeH GTPase › beta-sandwich domain in YqeH GTPase › beta-sandwich domain in YqeH GTPase › YqeH-like_C 0.64 56.0 4.32e-01 100.0% 49.3%
3967555 10.12.1.53 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_3 0.64 45.0 3.17e-01 77.0% 24.8%
3453800 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.63 45.0 2.89e-01 75.4% 16.3%
3516643 390.1.1.0 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.63 45.0 3.94e-01 77.0% 76.8%
3222026 10.4.1.9 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB_2 0.62 44.0 3.65e-01 75.4% 46.1%
3231214 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.62 44.0 3.59e-01 75.4% 71.7%
2156522 12.1.1.50 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_31_3rd 0.62 51.0 4.04e-01 96.7% 49.6%
220098 11.1.1.93 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1425 0.62 43.0 3.77e-01 73.8% 80.2%
3212038 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.62 43.0 3.39e-01 75.4% 80.7%
3636139 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.61 42.0 3.93e-01 73.8% 57.5%
3719286 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 44.0 3.84e-01 80.3% 67.0%
3836203 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.59 41.0 3.24e-01 75.4% 75.7%
3788140 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.58 48.0 3.82e-01 100.0% 95.2%
3474409 11.1.1.550 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin_3 0.58 41.0 3.48e-01 77.0% 51.8%
3371040 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.56 47.0 3.45e-01 96.7% 52.4%
3658091 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.56 44.0 3.26e-01 96.7% 53.5%
4528240 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.55 47.0 3.44e-01 96.7% 51.8%
3667233 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.55 47.0 3.46e-01 98.4% 50.3%
4963619 11.1.4.52 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF4397 0.55 40.0 3.49e-01 78.7% 54.0%
3179215 101.1.2.493 ↗ alpha arrays › HTH › HTH › winged helix domain › PF26557 0.53 38.0 3.45e-01 77.0% 63.5%
2330287 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.52 44.0 3.19e-01 96.7% 47.3%
3833339 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.52 42.0 3.24e-01 100.0% 61.7%
1833203 11.1.1.239 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG3 0.51 38.0 3.11e-01 83.6% 79.4%