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KR149291.1__AKH49546.1__X__00004

Bact-Vir

KR149291.1__AKH49546.1__X__00004

Identity

Accession:
KR149291 ↗
Kingdom:
phage

Quality

79.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-73
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h20A04 1.10.1240.50 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.82 59.0 5.42e-01 74.6% 67.4%
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 53.0 5.87e-01 71.8% 98.2%
1w36C06 1.10.10.990 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.76 55.0 5.52e-01 77.5% 81.9%
2zj2A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 53.0 5.03e-01 76.1% 72.6%
1vkeB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.67 49.0 4.35e-01 76.1% 60.4%
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 47.0 4.72e-01 76.1% 76.0%
1mzbA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 47.0 4.55e-01 74.6% 65.9%
2rn7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 47.0 4.84e-01 100.0% 81.8%
7y4rB01 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.66 48.0 4.27e-01 78.9% 53.8%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 47.0 4.22e-01 77.5% 72.8%
3r2cA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.65 57.0 4.63e-01 100.0% 96.4%
4a18Q01 1.10.10.1760 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L36 0.65 44.0 4.50e-01 71.8% 72.5%
3beyD00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.65 48.0 4.38e-01 78.9% 59.6%
3rrcB01 1.20.1310.20 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Duffy-antigen binding domain 0.64 48.0 3.72e-01 80.3% 59.5%
5dikA00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.64 45.0 3.91e-01 74.6% 47.3%
5e5bA02 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.64 56.0 3.82e-01 100.0% 70.4%
2vxdA00 1.10.10.2100 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Nucleophosmin, C-terminal domain 0.64 44.0 4.83e-01 71.8% 100.0%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 49.0 4.75e-01 94.4% 75.6%
2kiwA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.63 46.0 4.42e-01 80.3% 73.3%
1ignB02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.63 45.0 4.18e-01 76.1% 85.9%
2bl0C01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.62 46.0 4.54e-01 77.5% 85.3%
2ouwB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.62 48.0 3.91e-01 84.5% 47.8%
4yzwA01 1.20.1370.10 Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › Hemocyanin, N-terminal domain 0.62 43.0 3.43e-01 77.5% 34.9%
5x2bD00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 46.0 3.09e-01 78.9% 58.0%
6pw7A02 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.61 47.0 4.71e-01 88.7% 81.7%
4akrA01 3.30.1140.60 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit 0.61 45.0 4.08e-01 83.1% 67.0%
4wz9A04 1.25.50.20 Mainly Alpha › Alpha Horseshoe › Zincin-like fold › 0.61 44.0 2.94e-01 80.3% 17.5%
2fozA00 1.10.4080.10 Mainly Alpha › Orthogonal Bundle › ADP-ribosylglycohydrolase fold › ADP-ribosylation/Crystallin J1 0.60 50.0 3.31e-01 98.6% 62.2%
2reoA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 44.0 3.14e-01 78.9% 67.6%
2raeA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.59 48.0 3.93e-01 93.0% 80.3%
2cvzA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.57 50.0 4.10e-01 97.2% 79.5%
1p2fA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 40.0 3.71e-01 74.6% 55.8%
2jqtA00 1.20.1280.40 Mainly Alpha › Up-down Bundle › Monooxygenase › HHA 0.57 40.0 4.35e-01 78.9% 93.0%
4gtnA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.57 42.0 4.21e-01 80.3% 74.3%
1fmjA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 41.0 2.68e-01 77.5% 60.5%
2lbfB01 1.10.10.1410 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.56 46.0 4.70e-01 91.5% 94.2%
2pkeA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.56 39.0 3.82e-01 73.2% 85.9%
1jgcA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.56 39.0 3.00e-01 73.2% 44.4%
1xvhB00 1.20.120.1850 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Ebh helix bundles repeating unit (S and A modules) 0.55 37.0 3.15e-01 83.1% 41.5%
7zcvA02 1.25.40.400 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.55 43.0 3.19e-01 87.3% 50.5%
4i8oA03 1.10.8.1130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Bacterial toxin RNase RnlA/LsoA, C-terminal Dmd-binding domain 0.55 37.0 3.82e-01 70.4% 71.6%
3u4qB04 6.10.140.1030 Special › Helix non-globular › Helix Hairpins › 0.55 37.0 3.82e-01 76.1% 73.9%
3r2kA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.55 38.0 2.98e-01 73.2% 45.5%
2chpA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.54 39.0 3.13e-01 77.5% 55.4%
2of7A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 43.0 3.64e-01 97.2% 85.0%
3lqhA02 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.53 38.0 3.38e-01 74.6% 68.9%
1q1qA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 43.0 2.91e-01 88.7% 59.7%
4xt1A00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.53 41.0 2.72e-01 83.1% 66.7%
1s3qG00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.53 38.0 2.93e-01 76.1% 44.8%
1gt0D00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.53 28.0 2.78e-01 95.8% 41.8%
1uujA00 1.20.960.30 Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › 0.52 38.0 3.80e-01 83.1% 84.2%
4k0dA00 1.20.120.1730 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.52 43.0 3.50e-01 94.4% 68.5%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3632341 101.1.1.176 alpha arrays › HTH › HTH › Three-helical HTH › DEK_C 0.85 62.0 6.47e-01 76.1% 93.8%
4609007 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.85 58.0 6.70e-01 74.6% 100.0%
5027755 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 56.0 5.40e-01 70.4% 68.8%
4936137 7000.1.1.0 alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.82 58.0 6.04e-01 73.2% 86.2%
3782008 101.1.17.19 alpha arrays › HTH › HTH › FF domain › DEK_C 0.80 60.0 6.24e-01 78.9% 95.4%
4960526 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.80 59.0 5.64e-01 77.5% 95.0%
3944357 101.1.1.394 alpha arrays › HTH › HTH › Three-helical HTH › DUF4158 0.79 59.0 5.57e-01 78.9% 74.1%
5011654 101.1.2.374 alpha arrays › HTH › HTH › winged helix domain › MCM4_WHD 0.79 54.0 5.52e-01 71.8% 81.2%
3701004 4133.1.1.0 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like 0.78 57.0 5.34e-01 76.1% 70.6%
4025261 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 58.0 4.97e-01 78.9% 54.5%
3337658 610.3.1.3 alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › tRNA_synt_1c_R1 0.76 55.0 4.07e-01 77.5% 33.5%
4930318 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.74 55.0 4.50e-01 78.9% 45.4%
3901969 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 53.0 5.56e-01 76.1% 84.6%
3919967 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 53.0 5.72e-01 76.1% 91.7%
4979742 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 50.0 4.80e-01 70.4% 67.5%
4964860 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 48.0 4.76e-01 76.1% 64.0%
3631439 592.7.1.0 alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain 0.72 53.0 4.80e-01 77.5% 60.0%
1566530 198.1.1.2 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.72 64.0 6.08e-01 94.4% 91.4%
3274434 198.1.1.2 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.72 65.0 6.04e-01 95.8% 84.7%
4935262 101.8.1.2 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 0.72 53.0 4.03e-01 77.5% 34.4%
3958076 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.72 63.0 4.11e-01 97.2% 45.7%
4027348 592.7.1.0 alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain 0.71 53.0 5.23e-01 78.9% 74.7%
3261028 198.1.1.2 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.71 62.0 5.87e-01 95.8% 85.9%
3672635 101.1.1.295 alpha arrays › HTH › HTH › Three-helical HTH › HTH_70 0.70 51.0 5.09e-01 77.5% 77.3%
4937420 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.70 58.0 3.46e-01 90.1% 22.2%
3277954 2008.1.1.67 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RecC_C 0.70 63.0 4.00e-01 98.6% 42.5%
3277060 198.1.1.2 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.70 62.0 6.11e-01 95.8% 96.0%
5013924 101.1.2.554 alpha arrays › HTH › HTH › winged helix domain › PF30184 0.70 50.0 4.67e-01 76.1% 63.3%
3504540 101.1.2.244 alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.70 47.0 5.21e-01 70.4% 98.2%
3273958 198.1.1.10 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2, SapB_1, Saposin 0.69 62.0 5.78e-01 95.8% 84.7%
4856249 151.1.1.1 alpha bundles › Hemocyanin-N › Hemocyanin-N › Hemocyanin-N › Hemocyanin_N 0.69 49.0 4.97e-01 77.5% 75.7%
4938693 101.1.2.70 alpha arrays › HTH › HTH › winged helix domain › PqqD 0.69 46.0 4.43e-01 71.8% 58.8%
3262552 198.1.1.2 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.69 59.0 5.79e-01 93.0% 94.7%
4236554 101.1.2.244 alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.69 46.0 4.98e-01 70.4% 90.0%
3740124 101.1.17.19 alpha arrays › HTH › HTH › FF domain › DEK_C 0.68 48.0 5.21e-01 73.2% 100.0%
4967950 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 50.0 4.63e-01 77.5% 87.8%
3196401 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.68 49.0 5.33e-01 81.7% 98.2%
3986130 2008.1.1.67 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RecC_C 0.68 56.0 3.63e-01 90.1% 42.3%
5047005 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 47.0 4.89e-01 73.2% 81.5%
3279756 101.1.2.25 alpha arrays › HTH › HTH › winged helix domain › FUR 0.68 49.0 4.02e-01 78.9% 52.1%
3397182 101.7.1.1 alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.67 46.0 5.06e-01 73.2% 100.0%
3963583 2008.1.1.67 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RecC_C 0.67 48.0 3.18e-01 77.5% 87.2%
3248091 198.1.1.2 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.66 55.0 5.26e-01 93.0% 90.6%
3177082 101.7.1.1 alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.66 45.0 4.77e-01 71.8% 91.7%
4480143 608.1.1.1 alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.65 48.0 4.17e-01 78.9% 51.8%
4951600 608.1.1.1 alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.65 49.0 4.06e-01 80.3% 45.6%
3304317 109.4.1.420 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.65 46.0 3.52e-01 76.1% 30.9%
3819026 109.4.1.1273 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3 0.64 45.0 3.32e-01 76.1% 26.3%
3221809 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.63 44.0 4.72e-01 76.1% 98.3%
3965372 195.1.1.0 alpha complex topology › NusB-like › NusB-like › NusB-like 0.62 54.0 4.62e-01 100.0% 70.8%
3178828 1075.4.1.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane 0.62 48.0 3.16e-01 85.9% 95.1%
5080146 101.1.2.554 alpha arrays › HTH › HTH › winged helix domain › PF30184 0.62 44.0 4.03e-01 77.5% 75.0%
3941457 1203.1.2.3 alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 › YiaAB 0.60 44.0 3.72e-01 77.5% 68.3%
5036214 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.60 43.0 4.51e-01 76.1% 100.0%
5078898 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.60 42.0 3.71e-01 76.1% 48.2%
None 0.59 43.0 2.86e-01 76.1% 59.7%
3332417 109.4.1.420 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.59 44.0 2.90e-01 83.1% 31.5%
5034431 101.1.2.21 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.59 43.0 3.48e-01 77.5% 47.1%
3176092 3924.1.1.1 alpha complex topology › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Fungal_trans_2 0.59 47.0 3.01e-01 91.5% 31.9%
2893772 2004.1.1.51 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sulfotransfer_1 0.57 45.0 2.97e-01 84.5% 60.8%
4982068 101.1.2.652 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.56 47.0 3.68e-01 90.1% 44.8%
4157410 629.1.1.1 alpha bundles › TorD-like (Pfam 06192) › TorD-like (Pfam 06192) › TorD-like (Pfam 06192) › Nitrate_red_del 0.54 39.0 3.02e-01 80.3% 80.6%
5059337 101.1.2.21 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.54 44.0 3.60e-01 91.5% 47.1%
3943344 183.1.1.0 alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain 0.54 43.0 3.53e-01 90.1% 46.4%
3438907 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.53 40.0 2.80e-01 81.7% 40.4%