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KR296685.1__AKJ74394.1__SP21_7__00007

Bact-Vir

KR296685.1__AKJ74394.1__SP21_7__00007

Identity

Accession:
KR296685 ↗
Kingdom:
phage

Quality

63.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-59
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8d3lA01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.74 49.0 3.93e-01 79.5% 34.1%
1e2tA02 3.30.1120.150 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.71 47.0 3.84e-01 100.0% 36.0%
1gbgA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.67 58.0 3.73e-01 100.0% 45.3%
3hxlA02 2.60.40.4290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.66 54.0 4.32e-01 93.2% 55.6%
1wggA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.66 46.0 4.01e-01 77.3% 68.5%
7b2sA01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.66 55.0 3.86e-01 100.0% 60.6%
4omfB02 3.10.450.750 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 51.0 5.05e-01 93.2% 89.4%
1q7hA01 3.10.450.120 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 0.65 52.0 4.77e-01 100.0% 78.5%
1v73A00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.64 54.0 3.26e-01 100.0% 79.8%
4jqtA01 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.64 54.0 3.57e-01 100.0% 50.7%
5mu3B00 3.40.50.12050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.63 44.0 3.01e-01 93.2% 19.6%
3cxbA01 3.30.2440.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein SifA fold › Secreted effector protein SifA 0.63 44.0 3.36e-01 77.3% 44.3%
3igfA02 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 44.0 3.83e-01 77.3% 48.6%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 48.0 3.46e-01 88.6% 75.7%
6ptrB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.62 50.0 3.85e-01 97.7% 94.7%
4dixA02 2.30.29.140 Mainly Beta › Roll › PH-domain like › 0.60 50.0 3.71e-01 100.0% 55.2%
4n06A01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.60 40.0 3.40e-01 72.7% 37.8%
6qp9B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 48.0 2.83e-01 100.0% 43.4%
2rh0A01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 42.0 3.83e-01 79.5% 59.4%
2wm1A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.58 45.0 2.70e-01 95.5% 11.7%
3noyB02 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.58 50.0 3.94e-01 100.0% 66.3%
2pptA02 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 41.0 3.30e-01 84.1% 72.6%
1wguA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 47.0 3.60e-01 97.7% 56.5%
2q07A02 3.10.450.90 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › ArcTGT, C2 domain 0.57 43.0 4.00e-01 93.2% 67.7%
1r26A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 42.0 3.29e-01 86.4% 65.5%
2gumB01 2.30.30.1230 Mainly Beta › Roll › SH3 type barrels. › 0.55 48.0 3.63e-01 100.0% 42.0%
2i8dA01 3.90.1150.200 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.55 47.0 3.90e-01 100.0% 66.7%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 41.0 3.88e-01 100.0% 66.7%
4s39A02 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.55 48.0 3.55e-01 100.0% 75.0%
3tx8A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.55 46.0 2.87e-01 95.5% 38.2%
4gnrA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 46.0 3.26e-01 100.0% 95.9%
1gh2A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 47.0 3.51e-01 97.7% 84.1%
3emxA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 48.0 3.47e-01 100.0% 80.6%
6fucA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 41.0 3.52e-01 100.0% 48.8%
2ljwA00 3.30.428.40 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › Protein of unknown function DUF3067 0.53 40.0 3.14e-01 84.1% 85.6%
1w4vA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 44.0 3.30e-01 95.5% 81.8%
2jh3A03 3.30.1360.190 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.53 45.0 3.41e-01 100.0% 63.4%
3vp7A00 1.10.418.40 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Autophagy protein 6/Beclin 1 0.50 39.0 2.72e-01 100.0% 24.1%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.50 38.0 3.67e-01 100.0% 78.3%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3207575 5.1.4.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.84 57.0 3.34e-01 100.0% 10.2%
3631797 5.1.4.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.81 55.0 3.27e-01 100.0% 10.2%
4031639 241.7.1.1 a+b two layers › Type III secretory system chaperone-like › YgaC/TfoX-N like › YgaC/TfoX-N like › TfoX_N 0.77 56.0 4.39e-01 86.4% 37.8%
4649506 3239.1.1.1 alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.76 50.0 2.98e-01 79.5% 9.5%
4971298 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.74 55.0 4.57e-01 79.5% 48.0%
3472821 5.1.4.48 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS1 0.73 58.0 3.32e-01 100.0% 9.4%
5059446 241.7.1.1 a+b two layers › Type III secretory system chaperone-like › YgaC/TfoX-N like › YgaC/TfoX-N like › TfoX_N 0.71 52.0 4.07e-01 84.1% 36.0%
5025174 243.6.1.0 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.71 55.0 4.83e-01 90.9% 68.6%
4937221 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.71 48.0 4.00e-01 100.0% 41.3%
4980090 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.71 52.0 4.27e-01 79.5% 45.0%
3609404 5.1.4.48 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS1 0.71 56.0 3.27e-01 100.0% 9.9%
3466594 5.3.1.2 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin 0.69 57.0 4.17e-01 100.0% 60.7%
4974156 241.11.1.0 a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like 0.69 49.0 3.79e-01 79.5% 33.0%
5041419 243.6.1.9 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 0.68 53.0 4.56e-01 93.2% 62.5%
4978994 241.11.1.0 a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like 0.68 48.0 3.63e-01 79.5% 31.4%
4969302 243.6.1.0 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.68 55.0 4.94e-01 100.0% 74.3%
3284412 241.11.1.6 a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › TfoX_N 0.68 47.0 3.67e-01 77.3% 31.4%
4947234 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.67 56.0 3.35e-01 100.0% 47.8%
5058991 243.6.1.1 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.66 54.0 4.81e-01 100.0% 77.1%
4560753 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.66 53.0 3.88e-01 88.6% 84.3%
3280585 241.11.1.1 a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › YjbR 0.66 46.0 3.49e-01 79.5% 30.0%
4984519 243.6.1.1 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.65 52.0 4.70e-01 100.0% 74.3%
3646130 2003.1.5.31 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.65 50.0 3.11e-01 95.5% 14.9%
4974000 243.6.1.0 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.65 53.0 4.84e-01 100.0% 76.9%
4033196 304.4.1.4 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.65 44.0 3.13e-01 100.0% 22.1%
3964807 9.7.1.2 beta barrels › Lipocalins/Streptavidin › Metalloprotease inhibitor › Metalloprotease inhibitor › PF28291 0.64 55.0 4.38e-01 100.0% 52.6%
4207880 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.63 52.0 4.04e-01 95.5% 41.0%
3416069 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.63 42.0 3.65e-01 100.0% 42.9%
3415353 5.1.4.48 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS1 0.62 50.0 3.04e-01 95.5% 19.7%
3311403 2003.1.5.31 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.62 46.0 2.73e-01 95.5% 9.0%
3250073 592.7.1.0 alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain 0.62 43.0 3.05e-01 72.7% 50.0%
3647789 2003.1.5.31 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.62 46.0 2.83e-01 88.6% 12.1%
3348659 2003.1.5.31 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.62 47.0 2.81e-01 95.5% 10.3%
3394677 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.61 49.0 3.08e-01 95.5% 23.0%
3819664 2003.1.5.31 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.61 46.0 2.71e-01 86.4% 9.3%
3811555 2003.1.5.31 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.61 45.0 2.70e-01 93.2% 9.4%
4478186 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 45.0 4.57e-01 95.5% 84.4%
3926611 5.1.4.220 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR35_2nd 0.61 51.0 3.12e-01 100.0% 43.2%
3800021 5.1.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed › Hemopexin 0.61 49.0 3.27e-01 97.7% 53.9%
3335049 2003.1.5.31 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.60 47.0 2.79e-01 100.0% 10.8%
3384583 5.1.4.38 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC1 0.60 50.0 2.93e-01 100.0% 11.1%
3946655 7515.1.1.22 a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › CBP_BcsG 0.60 51.0 3.04e-01 100.0% 99.7%
3563238 2003.1.10.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain 0.60 42.0 3.14e-01 75.0% 76.5%
3823655 2003.1.5.31 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.60 48.0 2.81e-01 100.0% 9.7%
3648162 2003.1.5.31 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.59 47.0 2.80e-01 95.5% 10.0%
5039096 274.1.1.67 a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF7289 0.59 43.0 3.24e-01 81.8% 67.8%
4989504 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.58 47.0 2.87e-01 97.7% 18.4%
3931934 330.9.1.0 a+b two layers › dsRBD-like › C-terminal domain in LINE-1 ORF1p › C-terminal domain in LINE-1 ORF1p 0.58 40.0 3.54e-01 72.7% 63.1%
2444658 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.58 44.0 2.88e-01 93.2% 37.2%
3481353 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 46.0 2.83e-01 100.0% 31.3%
None 0.57 46.0 2.74e-01 95.5% 10.6%
5047479 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 50.0 3.74e-01 100.0% 58.2%
3389592 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.57 35.0 2.65e-01 81.8% 25.0%
5016434 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 38.0 3.29e-01 100.0% 40.0%
5036621 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 43.0 4.14e-01 100.0% 72.7%
4201132 2003.1.5.31 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.57 45.0 2.67e-01 95.5% 10.0%
3351239 2003.1.5.31 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.56 42.0 2.55e-01 93.2% 9.5%
4937562 243.6.1.0 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.55 44.0 3.89e-01 93.2% 68.6%
3734635 3755.3.1.436 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › APG6 0.55 40.0 2.48e-01 95.5% 11.4%
3628751 331.18.1.0 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc 0.53 38.0 2.68e-01 84.1% 35.1%
4359892 4.1.1.96 beta barrels › SH3 › SH3 › SH3 › Hfq 0.53 41.0 3.62e-01 100.0% 56.2%
4451993 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.53 41.0 3.89e-01 100.0% 71.7%
3269220 4106.1.1.1 few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.51 35.0 2.22e-01 72.7% 21.3%