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KR296685.1__AKJ74429.1__SP21_42__00042
Bact-VirKR296685.1__AKJ74429.1__SP21_42__00042
Identity
- Accession:
- KR296685 ↗
- Kingdom:
- phage
Quality
72.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-39
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2v0xA01 | 1.10.287.3160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.83 | 70.0 | 4.59e-01 | 100.0% | 22.6% |
| 5ejrA01 | 1.25.40.530 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › MyTH4 domain | 0.83 | 65.0 | 4.11e-01 | 100.0% | 17.4% |
| 1f14A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.81 | 65.0 | 4.01e-01 | 86.8% | 17.9% |
| 6ynwH01 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.80 | 70.0 | 5.62e-01 | 100.0% | 52.7% |
| 3uonA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.78 | 68.0 | 4.03e-01 | 100.0% | 14.3% |
| 2wgmA01 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.77 | 65.0 | 5.13e-01 | 100.0% | 47.6% |
| 2qkdA02 | 2.60.120.1040 | Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain | 0.75 | 58.0 | 4.03e-01 | 100.0% | 25.0% |
| 7nafR01 | 1.10.1200.240 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › | 0.75 | 58.0 | 5.44e-01 | 100.0% | 70.0% |
| 3pjvD01 | 3.30.110.200 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › | 0.74 | 64.0 | 5.11e-01 | 100.0% | 57.7% |
| 4dccA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.74 | 57.0 | 4.60e-01 | 86.8% | 44.6% |
| 4e12A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.73 | 64.0 | 4.05e-01 | 97.4% | 19.7% |
| 1uyjA01 | 3.30.360.60 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › | 0.67 | 47.0 | 3.83e-01 | 94.7% | 36.6% |
| 7m7iA02 | 3.30.70.3290 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.67 | 54.0 | 4.49e-01 | 94.7% | 86.5% |
| 4k08A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.66 | 53.0 | 3.72e-01 | 100.0% | 27.1% |
| 3urrA00 | 3.40.930.10 | Alpha Beta › 3-Layer(aba) Sandwich › Mannitol-specific EII; Chain A › Mannitol-specific EII; Chain A | 0.63 | 48.0 | 3.18e-01 | 81.6% | 20.4% |
| 2vfrA05 | 1.10.45.10 | Mainly Alpha › Orthogonal Bundle › Vanillyl-alcohol Oxidase; Chain A, domain 4 › Vanillyl-alcohol Oxidase; Chain A, domain 4 | 0.62 | 46.0 | 4.60e-01 | 78.9% | 84.2% |
| 1rsoB00 | 1.10.287.650 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain | 0.61 | 48.0 | 4.43e-01 | 100.0% | 67.9% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3929912 | 109.3.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 | 0.84 | 74.0 | 4.61e-01 | 100.0% | 30.7% |
| 3351064 | 540.1.1.1 ↗ | few secondary structure elements › Cytochrome c oxidase subunit h › Cytochrome c oxidase subunit h › Cytochrome c oxidase subunit h › COX6B | 0.84 | 72.0 | 6.08e-01 | 100.0% | 60.0% |
| 3360727 | 1054.1.1.2 ↗ | alpha bundles › Arginine decarboxylase C-terminal helical extension › Arginine decarboxylase C-terminal helical extension › Arginine decarboxylase C-terminal helical extension › DUF7746 | 0.79 | 65.0 | 6.21e-01 | 94.7% | 77.8% |
| 3679135 | 540.1.1.1 ↗ | few secondary structure elements › Cytochrome c oxidase subunit h › Cytochrome c oxidase subunit h › Cytochrome c oxidase subunit h › COX6B | 0.78 | 64.0 | 5.79e-01 | 100.0% | 65.5% |
| 3791329 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.77 | 64.0 | 3.69e-01 | 100.0% | 11.9% |
| 3293826 | 4033.1.1.5 ↗ | alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA_ox_N | 0.76 | 68.0 | 5.27e-01 | 100.0% | 50.0% |
| 3309680 | 170.1.1.26 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › DUF7746 | 0.74 | 65.0 | 4.64e-01 | 100.0% | 78.2% |
| 3327079 | 192.31.1.3 ↗ | alpha bundles › Long alpha-hairpin › CP12 › CP12 › CHCH | 0.72 | 51.0 | 5.32e-01 | 78.9% | 88.6% |
| 3250198 | 604.1.1.119 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › ORMDL | 0.71 | 56.0 | 4.26e-01 | 94.7% | 91.0% |