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KR296689.1__AKJ74079.1__SP35_16__00016
Bact-VirKR296689.1__AKJ74079.1__SP35_16__00016
Identity
- Accession:
- KR296689 ↗
- Kingdom:
- phage
Quality
91.2
mean pLDDT
Taxonomy
TaxID: 1654888
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-60
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kdrA02 | 3.40.140.120 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › | 0.62 | 48.0 | 3.75e-01 | 98.3% | 38.6% |
| 4by3A00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.57 | 39.0 | 2.51e-01 | 76.3% | 33.7% |
| 1rq5A02 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.56 | 42.0 | 2.51e-01 | 84.7% | 35.5% |
| 1di2A00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.56 | 37.0 | 3.62e-01 | 71.2% | 87.0% |
| 3licA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.56 | 46.0 | 3.30e-01 | 93.2% | 64.6% |
| 1o51A00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 39.0 | 3.53e-01 | 89.8% | 51.7% |
| 1vq8D00 | 3.30.1440.10 | Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 | 0.54 | 36.0 | 2.86e-01 | 81.4% | 29.3% |
| 2wuqB00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.52 | 39.0 | 2.58e-01 | 83.1% | 66.1% |
| 4eoyB00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.52 | 38.0 | 3.01e-01 | 88.1% | 37.4% |
| 6ruiB05 | 3.90.1070.20 | Alpha Beta › Alpha-Beta Complex › Hypothetical Protein Ta0175; Chain: A, domain 2 › | 0.52 | 43.0 | 3.71e-01 | 91.5% | 69.6% |
| 5uayA02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.51 | 41.0 | 3.73e-01 | 91.5% | 95.2% |
| 2vfrA04 | 3.30.70.2520 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 40.0 | 3.53e-01 | 89.8% | 57.4% |
| 1whnA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 40.0 | 3.50e-01 | 93.2% | 73.3% |
| 2d3o100 | 3.30.70.1050 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain | 0.51 | 38.0 | 3.22e-01 | 100.0% | 48.0% |
| 5d4nC00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 35.0 | 3.12e-01 | 83.1% | 46.9% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4009818 | 3268.1.1.1 ↗ | a+b two layers › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › XdhC_CoxI | 0.64 | 39.0 | 3.27e-01 | 76.3% | 37.0% |
| 4932518 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.62 | 51.0 | 4.38e-01 | 91.5% | 94.7% |
| 5072501 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.61 | 50.0 | 4.24e-01 | 93.2% | 97.0% |
| 4945814 | 2011.1.1.8 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 | 0.61 | 50.0 | 3.18e-01 | 96.6% | 17.0% |
| 4975149 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.60 | 48.0 | 4.13e-01 | 91.5% | 99.0% |
| 3787852 | 3121.1.1.0 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain | 0.60 | 52.0 | 4.19e-01 | 100.0% | 70.0% |
| 5070856 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.60 | 49.0 | 4.09e-01 | 94.9% | 95.5% |
| 4972484 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.60 | 49.0 | 4.11e-01 | 93.2% | 94.3% |
| 5027911 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.59 | 48.0 | 4.07e-01 | 91.5% | 98.0% |
| 4978945 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.59 | 46.0 | 3.86e-01 | 89.8% | 86.4% |
| 5044372 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.58 | 48.0 | 4.04e-01 | 96.6% | 97.3% |
| 4946164 | 1036.1.1.0 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain | 0.57 | 47.0 | 3.97e-01 | 94.9% | 97.1% |
| None | — | 0.57 | 44.0 | 2.62e-01 | 81.4% | 21.9% | |
| 3163957 | 881.1.1.38 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PF27161 | 0.57 | 37.0 | 2.70e-01 | 98.3% | 22.9% |
| 5071357 | 2011.1.1.6 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M20 | 0.57 | 48.0 | 3.09e-01 | 96.6% | 21.7% |
| 3166475 | 3121.1.1.0 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain | 0.56 | 45.0 | 4.03e-01 | 98.3% | 92.6% |
| 5065856 | 312.1.1.0 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related | 0.56 | 45.0 | 3.41e-01 | 96.6% | 49.7% |
| 3702588 | 3121.1.1.0 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain | 0.55 | 47.0 | 4.17e-01 | 100.0% | 85.6% |
| 4965522 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.54 | 43.0 | 3.67e-01 | 94.9% | 95.5% |
| 3922689 | 4961.1.1.2 ↗ | a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpa2_4 | 0.53 | 45.0 | 3.80e-01 | 94.9% | 65.0% |
| 3422928 | 3121.1.1.1 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA | 0.52 | 44.0 | 3.53e-01 | 100.0% | 63.1% |
| 4459240 | 3121.1.1.1 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA | 0.52 | 42.0 | 3.89e-01 | 94.9% | 93.8% |
D2
high
residues 64-117
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3au0A01 | 2.60.40.1280 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.74 | 45.0 | 3.28e-01 | 100.0% | 22.1% |
| 1g6zA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.73 | 46.0 | 4.29e-01 | 100.0% | 50.0% |
| 1vhsA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.68 | 49.0 | 3.47e-01 | 77.8% | 53.9% |
| 3irpX01 | 2.60.40.1280 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.66 | 46.0 | 3.28e-01 | 90.7% | 26.3% |
| 4jxqA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.64 | 47.0 | 3.24e-01 | 77.8% | 48.9% |
| 7mhwA01 | 2.40.128.10 | Mainly Beta › Beta Barrel › Lipocalin › | 0.63 | 53.0 | 4.47e-01 | 92.6% | 91.0% |
| 2gu1A01 | 3.10.450.350 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 43.0 | 3.65e-01 | 74.1% | 92.0% |
| 3buuB00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.61 | 51.0 | 3.36e-01 | 92.6% | 82.7% |
| 3icaB00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.59 | 47.0 | 3.22e-01 | 90.7% | 35.4% |
| 3i9v700 | 3.30.920.80 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › NADH-quinone oxidoreductase, subunit 15 | 0.58 | 46.0 | 3.61e-01 | 90.7% | 60.6% |
| 4ghbA00 | 2.40.160.190 | Mainly Beta › Beta Barrel › Porin › | 0.56 | 45.0 | 2.91e-01 | 100.0% | 19.2% |
| 4z48A00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.55 | 48.0 | 3.12e-01 | 100.0% | 30.8% |
| 3bk5A00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.55 | 47.0 | 3.12e-01 | 100.0% | 32.3% |
| 2zxqA05 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.51 | 39.0 | 2.76e-01 | 87.0% | 98.5% |
| 2py5A01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.51 | 37.0 | 2.66e-01 | 100.0% | 23.9% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3981484 | 4056.1.1.9 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_portal_2 | 0.90 | 81.0 | 6.36e-01 | 100.0% | 51.0% |
| 5082725 | 4056.1.1.9 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_portal_2 | 0.80 | 74.0 | 5.92e-01 | 100.0% | 54.0% |
| 3977478 | 4056.1.1.9 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_portal_2 | 0.79 | 69.0 | 5.53e-01 | 100.0% | 51.0% |
| None | — | 0.76 | 40.0 | 2.47e-01 | 100.0% | 9.2% | |
| 3989372 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.76 | 40.0 | 4.22e-01 | 100.0% | 56.0% |
| 3990074 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.70 | 53.0 | 4.27e-01 | 83.3% | 81.0% |
| 3812815 | 844.1.1.2 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR | 0.69 | 55.0 | 3.71e-01 | 87.0% | 32.6% |
| 5083372 | 4056.1.1.0 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein | 0.68 | 58.0 | 4.94e-01 | 100.0% | 58.8% |
| 3621467 | 844.1.1.0 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain | 0.68 | 53.0 | 3.48e-01 | 85.2% | 33.0% |
| 5049448 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.67 | 39.0 | 4.34e-01 | 96.3% | 77.5% |
| 5039983 | 4.6.1.0 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.66 | 48.0 | 4.52e-01 | 100.0% | 64.6% |
| 3738128 | 844.1.1.4 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Scramblase | 0.65 | 48.0 | 3.28e-01 | 79.6% | 36.3% |
| 4111045 | 243.1.1.64 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TcaA_2nd | 0.62 | 48.0 | 3.89e-01 | 92.6% | 43.8% |
| 5033844 | 71.1.1.8 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like | 0.62 | 50.0 | 3.27e-01 | 90.7% | 83.7% |
| 5080210 | 71.1.1.8 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like | 0.61 | 48.0 | 3.26e-01 | 88.9% | 81.4% |
| 5050431 | 283.2.1.8 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › PF29994 | 0.60 | 44.0 | 3.63e-01 | 100.0% | 41.9% |
| 4224368 | 375.14.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) | 0.59 | 40.0 | 3.68e-01 | 100.0% | 54.3% |
| 4447649 | 71.1.1.8 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like | 0.59 | 47.0 | 3.18e-01 | 92.6% | 38.7% |
| 3968297 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.57 | 51.0 | 3.67e-01 | 100.0% | 88.0% |
| 4096211 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.57 | 51.0 | 3.38e-01 | 100.0% | 39.5% |
| 3879896 | 11.1.1.1218 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3, Kelch_1, Kelch_HCF | 0.56 | 41.0 | 2.48e-01 | 85.2% | 27.2% |
| 3396526 | 327.11.2.12 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › GLD-3_KH2 | 0.56 | 43.0 | 3.57e-01 | 88.9% | 48.6% |
| 1548777 | 71.1.1.8 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like | 0.55 | 48.0 | 3.12e-01 | 100.0% | 30.8% |
| 3783107 | 7026.1.1.2 ↗ | beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › MDM31_MDM32 | 0.55 | 41.0 | 2.90e-01 | 85.2% | 41.5% |
| 4029154 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 50.0 | 3.72e-01 | 100.0% | 46.2% |
| 3589490 | 4023.1.1.1 ↗ | a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N | 0.52 | 45.0 | 3.44e-01 | 100.0% | 79.3% |
| 3492543 | 269.1.1.3 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › COLFI | 0.52 | 39.0 | 2.68e-01 | 88.9% | 23.0% |
| 4930644 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.51 | 46.0 | 3.93e-01 | 100.0% | 63.5% |