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KR296689.1__AKJ74147.1__SP35_84__00084

Bact-Vir

KR296689.1__AKJ74147.1__SP35_84__00084

Identity

Accession:
KR296689 ↗
Kingdom:
phage

Quality

75.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-38
PDB
Domain cluster: representative
CATH (58)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1cboA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.85 74.0 4.19e-01 100.0% 10.8%
3u2gA02 2.60.98.40 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › DU1608 C-terminal domain 0.79 67.0 4.51e-01 100.0% 25.6%
2kgtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.78 60.0 4.84e-01 100.0% 43.1%
7r97A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.72 59.0 4.83e-01 100.0% 51.5%
2hjjA00 3.30.160.130 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › ykff protein like domains 0.72 57.0 4.72e-01 100.0% 48.5%
3pmiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 55.0 4.63e-01 100.0% 47.7%
2kf2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.72 59.0 3.78e-01 100.0% 21.0%
2wadA01 6.20.70.10 Special › Other non-globular › Ubiquitin Ligase Nedd4; Chain: W; › 0.71 52.0 5.35e-01 97.0% 93.3%
1t4lB00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.71 54.0 4.23e-01 100.0% 40.0%
1wzlA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.70 53.0 4.19e-01 100.0% 38.6%
2hboA01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.69 55.0 3.79e-01 100.0% 25.6%
3gmvX00 3.10.450.730 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › BLIP domain 0.69 56.0 3.71e-01 100.0% 21.8%
2ap1A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.68 57.0 3.80e-01 100.0% 30.2%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 55.0 4.54e-01 100.0% 54.5%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 54.0 4.48e-01 100.0% 48.4%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.68 52.0 4.25e-01 100.0% 43.7%
1jlcB03 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.67 53.0 3.62e-01 100.0% 24.1%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.67 52.0 4.34e-01 100.0% 45.5%
6p2kB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.67 53.0 3.05e-01 100.0% 10.2%
6vt2A03 2.60.40.4140 Mainly Beta › Sandwich › Immunoglobulin-like › 0.67 51.0 3.71e-01 100.0% 69.2%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.66 49.0 4.30e-01 100.0% 50.8%
1ykdB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.66 49.0 3.15e-01 90.9% 27.8%
3u3gA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.66 52.0 3.58e-01 100.0% 34.3%
2itmA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.66 54.0 3.28e-01 100.0% 21.6%
1vhzA01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.65 53.0 3.39e-01 100.0% 19.7%
3t69A01 3.30.420.300 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, substrate binding domain 0.65 53.0 4.24e-01 100.0% 58.7%
5z0uA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.65 49.0 3.86e-01 100.0% 35.6%
1j0hA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.65 51.0 4.02e-01 100.0% 38.6%
3imhA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.65 52.0 3.05e-01 100.0% 33.4%
4o8sA01 3.10.450.620 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › JHP933, nucleotidyltransferase-like core domain 0.65 49.0 3.50e-01 100.0% 28.8%
2k7iA01 3.30.160.160 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YegP-like 0.64 52.0 4.76e-01 100.0% 75.0%
2f9wA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.64 49.0 3.44e-01 100.0% 24.4%
1szqA02 3.30.1330.120 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › 2-methylcitrate dehydratase PrpD 0.64 47.0 3.32e-01 100.0% 76.8%
3h6eB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.62 51.0 3.73e-01 100.0% 50.5%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.62 47.0 3.80e-01 100.0% 40.0%
4omfA00 1.10.645.10 Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B 0.62 49.0 2.84e-01 100.0% 63.1%
6lbtA01 2.40.50.810 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 51.0 3.41e-01 100.0% 36.6%
4o5fA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.61 47.0 3.32e-01 97.0% 66.1%
6ryvA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 45.0 3.95e-01 97.0% 87.7%
2a4hA01 3.40.30.50 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Sep15/SelM thioredoxin-like domain, active-site redox motif 0.60 44.0 3.74e-01 97.0% 85.3%
4perB00 3.10.130.10 Alpha Beta › Roll › P-30 Protein › Ribonuclease A-like domain 0.60 45.0 3.39e-01 97.0% 48.6%
1ea9C04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 45.0 3.68e-01 100.0% 39.5%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.60 49.0 3.94e-01 100.0% 58.2%
7jl1B01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.60 41.0 2.76e-01 100.0% 15.9%
4hizA04 4.10.1090.10 Few Secondary Structures › Irregular › Endosialidase, domain 4 › Endosialidase, domain 4 0.59 47.0 3.14e-01 100.0% 24.2%
4hqnA01 2.20.100.10 Mainly Beta › Single Sheet › TSP-1 type 1 repeat › Thrombospondin type-1 (TSP1) repeat 0.59 44.0 3.86e-01 100.0% 53.8%
3f02B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.59 44.0 3.44e-01 100.0% 65.0%
1xc3A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 45.0 3.39e-01 100.0% 35.9%
2gupA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 45.0 3.43e-01 100.0% 42.3%
3aapA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 46.0 3.22e-01 100.0% 52.0%
3gw6F01 4.10.1090.10 Few Secondary Structures › Irregular › Endosialidase, domain 4 › Endosialidase, domain 4 0.58 45.0 3.45e-01 100.0% 40.9%
4htlA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 45.0 3.38e-01 100.0% 42.0%
4cvuA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 43.0 3.07e-01 90.9% 56.9%
2ml5A00 3.10.450.410 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 41.0 2.81e-01 93.9% 24.5%
1k0rA01 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.55 41.0 3.19e-01 100.0% 35.4%
3r8eA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 41.0 2.94e-01 100.0% 33.6%
2qlvB02 2.20.25.290 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.55 40.0 4.05e-01 100.0% 89.5%
2qrdB01 2.20.25.290 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.52 39.0 3.96e-01 100.0% 89.2%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5008209 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.82 67.0 5.19e-01 100.0% 41.2%
3574742 4.1.1.47 beta barrels › SH3 › SH3 › SH3 › Gemin6 0.82 68.0 4.99e-01 97.0% 35.6%
4929592 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.76 57.0 5.56e-01 97.0% 74.4%
3981209 809.1.1.1 a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › SmpA_OmlA 0.76 61.0 4.76e-01 100.0% 43.8%
3288884 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 61.0 4.33e-01 100.0% 31.4%
3824699 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.73 61.0 5.02e-01 100.0% 55.4%
3650660 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.72 61.0 4.06e-01 100.0% 27.6%
3703932 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 57.0 4.86e-01 97.0% 53.3%
2104079 244.4.1.4 a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › PF27537 0.72 58.0 5.43e-01 100.0% 80.0%
4359332 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.72 58.0 4.43e-01 100.0% 38.6%
3598283 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 57.0 3.86e-01 97.0% 24.6%
4225063 3840.1.1.2 a+b two layers › Bacterial conjugation factor PsiB › Bacterial conjugation factor PsiB › Bacterial conjugation factor PsiB › PerB 0.69 53.0 3.87e-01 100.0% 29.1%
4998626 244.4.1.4 a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › PF27537 0.69 55.0 4.43e-01 100.0% 46.7%
3594027 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.69 58.0 3.43e-01 100.0% 13.8%
4134639 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.68 54.0 4.02e-01 100.0% 65.0%
360186 809.1.1.2 a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › BLIP 0.68 54.0 4.40e-01 100.0% 46.6%
4419937 77.1.1.0 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.68 54.0 4.17e-01 100.0% 37.6%
5023443 330.4.1.0 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 0.67 54.0 4.56e-01 100.0% 63.1%
3801624 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.67 55.0 4.03e-01 100.0% 36.0%
3511010 389.1.1.0 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.65 51.0 5.08e-01 90.9% 94.3%
3491785 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.65 53.0 3.84e-01 100.0% 30.4%
5076192 3604.1.1.1 a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.65 53.0 4.23e-01 100.0% 51.4%
4524363 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.63 49.0 4.20e-01 100.0% 55.4%
3969815 4210.1.1.5 a+b two layers › WGR domain › WGR domain › WGR domain › PA4575 0.63 51.0 3.81e-01 100.0% 48.0%
3966083 2484.1.1.37 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.62 48.0 3.46e-01 100.0% 27.8%
3352777 4325.1.1.0 mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.62 51.0 5.07e-01 100.0% 100.0%
135359 220.1.1.17 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_1 0.62 47.0 3.35e-01 100.0% 27.2%
3985367 244.4.1.4 a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › PF27537 0.61 49.0 3.85e-01 100.0% 43.4%
5022868 244.4.1.2 a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › NiFeSe_Hases 0.61 47.0 3.69e-01 93.9% 36.4%
4110324 4.1.1.252 beta barrels › SH3 › SH3 › SH3 › MdcG_N 0.61 48.0 3.85e-01 100.0% 47.5%
3979092 283.2.1.1 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.61 47.0 3.44e-01 100.0% 31.3%
1760264 244.4.1.3 a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › NiFeSe_Hases, PF27537 0.60 48.0 3.72e-01 100.0% 41.4%
5038162 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.60 46.0 3.04e-01 100.0% 20.6%
5031053 244.4.1.2 a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › NiFeSe_Hases 0.60 46.0 3.67e-01 93.9% 40.0%
3606311 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 49.0 3.89e-01 100.0% 49.3%
4889915 244.4.1.4 a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › PF27537 0.59 46.0 3.61e-01 100.0% 60.9%
1286823 244.4.1.3 a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › NiFeSe_Hases, PF27537 0.59 47.0 4.30e-01 100.0% 70.6%
3611339 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.59 46.0 3.65e-01 100.0% 41.2%
3873956 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 45.0 3.31e-01 100.0% 27.5%
3721942 4086.1.1.1 a+b two layers › AMPKBI-like › AMPKBI-like › AMPKBI-like › AMPKBI 0.58 45.0 3.37e-01 100.0% 32.4%
3658750 220.1.1.78 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.58 45.0 3.25e-01 100.0% 50.4%
3686792 263.1.1.0 a+b three layers › SRF-like › SRF-like › SRF-like 0.58 44.0 3.89e-01 100.0% 53.3%
1826875 330.13.1.1 a+b two layers › dsRBD-like › dGTP triphosphohydrolase inhibitor › dGTP triphosphohydrolase inhibitor › T7-like_gp12 0.57 44.0 3.52e-01 100.0% 51.8%
5018514 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 41.0 2.97e-01 100.0% 23.0%
145216 4086.1.1.1 a+b two layers › AMPKBI-like › AMPKBI-like › AMPKBI-like › AMPKBI 0.56 42.0 3.24e-01 100.0% 32.7%
5071954 1.1.3.0 beta barrels › cradle loop barrel › RIFT-related › AbrB 0.56 43.0 3.81e-01 100.0% 58.3%
3292852 4086.1.1.1 a+b two layers › AMPKBI-like › AMPKBI-like › AMPKBI-like › AMPKBI 0.56 43.0 3.36e-01 100.0% 37.9%
3483223 109.21.1.3 alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Sec16_C 0.55 40.0 2.33e-01 100.0% 7.6%
3194352 705.1.1.1 beta duplicates or obligate multimers › Cyanovirin-N › Cyanovirin-N › Cyanovirin-N › CVNH 0.54 41.0 3.03e-01 100.0% 28.9%
3938714 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 39.0 2.87e-01 100.0% 26.4%