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KR296690.1__AKJ73987.1__SP36_15__00015

Bact-Vir

KR296690.1__AKJ73987.1__SP36_15__00015

Identity

Accession:
KR296690 ↗
Kingdom:
phage

Quality

88.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Drexlerviridae› Tlsvirus› Salmonella_phage_36

TaxID: 1654889

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 42-108
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06381.17 best Phage_portal_3 37.3 1.90e-09 100.0% 19.4%
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 44.0 4.37e-01 80.6% 66.7%
1v1cA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 44.0 4.42e-01 100.0% 75.0%
4f0qA02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.61 43.0 3.19e-01 76.1% 57.8%
6rarI02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 40.0 3.74e-01 76.1% 100.0%
4nzrM02 2.160.20.180 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.56 41.0 3.07e-01 79.1% 95.1%
2k5dA01 2.40.50.390 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Conjugative transposon protein, DUF961 0.56 40.0 3.49e-01 77.6% 88.1%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.55 36.0 3.78e-01 77.6% 78.6%
7mwzD01 3.40.50.12100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein 0.54 43.0 3.23e-01 89.6% 35.6%
4h7uA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 45.0 3.14e-01 100.0% 84.6%
4y85C01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 40.0 3.38e-01 83.6% 85.5%
3fehA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 45.0 3.79e-01 100.0% 72.6%
2yrvA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 37.0 3.13e-01 88.1% 43.4%
2kigA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.52 42.0 3.36e-01 98.5% 67.1%
4h1sB02 3.90.780.10 Alpha Beta › Alpha-Beta Complex › 5'-nucleotidase; domain 2 › 5'-Nucleotidase, C-terminal domain 0.51 35.0 2.62e-01 76.1% 56.5%
1u6lA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.50 39.0 3.25e-01 86.6% 91.3%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3164773 4038.1.1.8 ↗ alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Abc1-like 0.82 76.0 6.80e-01 100.0% 86.7%
3501741 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.76 51.0 5.39e-01 82.1% 78.3%
3541241 4.1.1.8 ↗ beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.70 42.0 4.42e-01 82.1% 66.7%
3184359 10.12.1.12 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › TauD 0.67 48.0 2.98e-01 76.1% 34.6%
4941924 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.65 47.0 4.43e-01 80.6% 63.7%
5058926 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.64 45.0 4.36e-01 79.1% 66.7%
3581611 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 38.0 4.20e-01 100.0% 82.0%
3506500 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.62 39.0 4.53e-01 98.5% 100.0%
3530247 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 43.0 4.44e-01 100.0% 78.5%
5004293 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.59 46.0 4.21e-01 85.1% 71.1%
None — 0.59 50.0 3.31e-01 100.0% 87.4%
3721632 206.1.1.82 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › DUF7580 0.59 43.0 2.78e-01 79.1% 28.7%
3216746 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.58 39.0 4.23e-01 97.0% 85.5%
3764353 913.1.1.4 ↗ few secondary structure elements › Hormone receptor domain (HRM, Pfam 02793) › Hormone receptor domain (HRM, Pfam 02793) › Hormone receptor domain (HRM, Pfam 02793) › GPR128_N 0.58 43.0 3.97e-01 85.1% 62.4%
3172487 220.1.1.57 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_20 0.57 49.0 3.85e-01 100.0% 71.0%
3791430 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 38.0 4.14e-01 97.0% 85.5%
3898170 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.57 38.0 3.68e-01 100.0% 61.3%
3372819 330.3.1.1 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.57 39.0 3.54e-01 71.6% 54.7%
4830342 2003.1.2.16 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.57 48.0 3.61e-01 98.5% 92.4%
3753952 330.3.1.1 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.57 39.0 3.27e-01 73.1% 48.0%
4015067 330.3.1.0 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.56 39.0 3.30e-01 73.1% 45.0%
3635007 330.3.1.1 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.55 38.0 3.20e-01 74.6% 44.0%
3656582 330.3.1.1 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.55 37.0 3.90e-01 71.6% 100.0%
4015269 523.1.1.0 ↗ a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain 0.53 43.0 3.76e-01 88.1% 85.7%
3683968 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 39.0 3.06e-01 82.1% 62.9%
5047657 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 31.0 3.40e-01 70.1% 74.5%
3916040 219.1.1.4 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 0.51 44.0 2.84e-01 95.5% 46.3%
3724449 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.51 34.0 3.22e-01 70.1% 83.3%
3381772 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.51 38.0 2.77e-01 85.1% 57.7%