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KR296691.1__AKJ73946.1__SP37_79__00079

Bact-Vir

KR296691.1__AKJ73946.1__SP37_79__00079

Identity

Accession:
KR296691 ↗
Kingdom:
phage

Quality

67.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 66-116
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.77 66.0 6.72e-01 96.1% 98.0%
1sfnA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.72 48.0 3.02e-01 96.1% 14.3%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.72 63.0 5.55e-01 100.0% 77.6%
2uwqA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.72 53.0 4.51e-01 96.1% 47.7%
5zbeA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.69 48.0 3.75e-01 98.0% 34.6%
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.69 60.0 4.98e-01 100.0% 73.9%
3jrqA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.67 54.0 3.44e-01 92.2% 23.6%
2r7kA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.67 55.0 5.29e-01 98.0% 82.0%
2cs4A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.66 48.0 4.06e-01 100.0% 44.2%
6s2wA01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.66 54.0 4.68e-01 94.1% 76.8%
2w5eA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.65 47.0 4.36e-01 94.1% 61.5%
2fqpA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.64 44.0 3.59e-01 96.1% 38.9%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.63 55.0 5.09e-01 100.0% 77.3%
4p4tA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.63 51.0 3.13e-01 94.1% 14.0%
6cngA02 2.20.28.50 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain 0.63 44.0 4.91e-01 90.2% 100.0%
2pk0A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.62 51.0 3.36e-01 96.1% 23.9%
3nuhB02 3.30.300.370 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.62 52.0 4.04e-01 98.0% 97.5%
2vugA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.62 49.0 4.42e-01 94.1% 63.9%
2cryA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 51.0 4.13e-01 96.1% 55.9%
2iv2X04 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.61 51.0 4.06e-01 92.2% 47.5%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.61 50.0 4.22e-01 96.1% 56.5%
6jkvA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.60 48.0 3.26e-01 96.1% 24.8%
1lfwA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 48.0 3.93e-01 94.1% 99.1%
1txoB00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.60 49.0 3.28e-01 96.1% 24.2%
2dmhA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.59 50.0 3.70e-01 98.0% 96.4%
2jveA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.58 45.0 4.08e-01 94.1% 63.4%
2q0oA01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.57 39.0 2.80e-01 72.5% 91.7%
1i5pA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 48.0 3.47e-01 100.0% 54.4%
2j82A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.57 45.0 3.10e-01 98.0% 33.5%
2l7rA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 45.0 4.10e-01 94.1% 85.1%
3fysA01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 48.0 3.47e-01 100.0% 40.5%
6v55A01 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.56 49.0 3.81e-01 100.0% 67.9%
3hx1B00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.56 47.0 3.85e-01 100.0% 99.1%
2dt8A01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 40.0 2.97e-01 80.4% 79.2%
3au4A02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 44.0 3.83e-01 98.0% 72.3%
2ic2A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 46.0 3.72e-01 98.0% 56.7%
3b49A00 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.55 44.0 3.10e-01 98.0% 56.4%
4jxuA01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.55 41.0 3.25e-01 88.2% 86.8%
2z86D02 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.55 38.0 2.52e-01 78.4% 61.5%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.54 44.0 3.24e-01 100.0% 89.8%
6nwmA01 2.60.120.280 Mainly Beta › Sandwich › Jelly Rolls › Regulatory protein AraC 0.54 46.0 3.35e-01 100.0% 40.6%
1l3lA01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.54 37.0 2.72e-01 76.5% 92.9%
2yvlA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.54 46.0 4.46e-01 96.1% 89.7%
4o9gA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 43.0 3.24e-01 94.1% 42.8%
5wfiA01 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.52 46.0 3.47e-01 98.0% 44.6%
4ehoB03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.52 40.0 2.90e-01 92.2% 38.0%
4jf6A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 41.0 2.82e-01 100.0% 63.2%
4q0jA03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.51 38.0 2.97e-01 90.2% 45.8%
4x9xA01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 41.0 3.01e-01 92.2% 77.2%
4e6xB00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 37.0 2.36e-01 80.4% 44.5%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.51 40.0 2.89e-01 94.1% 82.5%
3lwcA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 33.0 2.81e-01 92.2% 35.0%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5012895 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.79 65.0 6.42e-01 92.2% 100.0%
4927132 815.1.1.0 a+b two layers › Chromosomal protein MC1 › Chromosomal protein MC1 › Chromosomal protein MC1 0.78 66.0 5.34e-01 94.1% 63.2%
3517068 3115.1.1.6 a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 0.78 69.0 6.40e-01 100.0% 95.4%
4962210 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.71 48.0 3.76e-01 98.0% 32.7%
4954188 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.70 55.0 4.01e-01 90.2% 31.5%
4935672 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.68 54.0 4.00e-01 90.2% 33.6%
4991413 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.68 50.0 5.45e-01 96.1% 100.0%
3489127 10.32.1.88 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Glyco_hydro_2_N2 0.65 56.0 3.75e-01 98.0% 55.1%
5059796 4326.1.1.0 a+b two layers › ERH-like › ERH-like › ERH-like 0.64 54.0 4.90e-01 98.0% 71.0%
4461643 379.1.1.3 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 0.63 48.0 4.62e-01 98.0% 73.3%
4599214 221.1.1.73 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RASSF8-10_RA 0.62 52.0 4.21e-01 98.0% 82.9%
4655745 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.62 54.0 4.37e-01 100.0% 97.0%
3689809 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.61 46.0 4.74e-01 94.1% 95.6%
4869120 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.61 51.0 4.08e-01 98.0% 60.9%
4151900 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.60 52.0 3.83e-01 100.0% 37.5%
3374645 109.4.1.1291 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.60 49.0 2.84e-01 94.1% 17.5%
3513575 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.60 50.0 3.99e-01 100.0% 45.2%
3808573 109.4.1.3485 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, DYW_deaminase, Eplus_motif, E_motif 0.60 49.0 2.94e-01 94.1% 22.2%
5017559 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 49.0 4.55e-01 92.2% 98.5%
3595003 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.59 49.0 4.75e-01 98.0% 93.3%
3988217 241.12.1.0 a+b two layers › Type III secretory system chaperone-like › YktB/PF0168-like › YktB/PF0168-like 0.58 45.0 3.09e-01 96.1% 22.5%
3699329 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.57 44.0 2.79e-01 100.0% 14.1%
4961283 101.1.2.935 alpha arrays › HTH › HTH › winged helix domain › HVO_B0008_C 0.57 39.0 3.31e-01 94.1% 37.6%
1566366 223.1.1.1 a+b three layers › Profilin-like › sensor domains › sensor domains › PHY 0.57 42.0 2.93e-01 80.4% 96.3%
4596042 223.1.1.7 a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind 0.56 39.0 2.77e-01 72.5% 90.6%
5002607 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.56 46.0 4.00e-01 96.1% 100.0%
3395603 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.56 46.0 3.74e-01 98.0% 88.2%
3711374 221.1.1.51 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › USP7_C2 0.56 45.0 3.58e-01 98.0% 74.2%
3874516 206.1.1.74 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr 0.56 41.0 2.55e-01 86.3% 35.0%
3840071 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 46.0 2.84e-01 94.1% 19.1%
4203413 109.3.1.218 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_KRIT1 0.55 42.0 2.83e-01 98.0% 25.2%
3258524 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.55 43.0 2.96e-01 98.0% 68.5%
2514619 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.54 44.0 2.91e-01 96.1% 28.7%
3875549 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.53 44.0 3.05e-01 96.1% 34.9%
3258276 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.53 43.0 2.90e-01 96.1% 31.6%
4871764 223.1.1.1 a+b three layers › Profilin-like › sensor domains › sensor domains › PHY 0.53 38.0 3.06e-01 88.2% 50.0%
3879988 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.53 43.0 2.90e-01 96.1% 32.1%
4978525 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.52 36.0 2.37e-01 100.0% 14.5%
4122132 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 45.0 2.73e-01 96.1% 15.5%
3936136 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.52 43.0 3.12e-01 98.0% 30.3%
3267853 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.52 42.0 2.87e-01 96.1% 30.9%
3543655 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.52 42.0 2.86e-01 96.1% 31.4%
3962617 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.52 42.0 2.90e-01 96.1% 32.7%
3637401 4081.1.1.8 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT_2 0.52 42.0 2.88e-01 96.1% 31.4%
5038375 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.51 42.0 2.89e-01 96.1% 33.5%
3495764 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.51 42.0 2.95e-01 96.1% 37.3%
None 0.51 43.0 3.50e-01 94.1% 61.1%
3205036 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.51 42.0 2.77e-01 96.1% 28.2%
3571103 4081.1.1.8 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT_2 0.51 40.0 2.79e-01 98.0% 63.7%