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KR296692.1__AKJ73630.1__SP38_28__00028
Bact-VirKR296692.1__AKJ73630.1__SP38_28__00028
Identity
- Accession:
- KR296692 ↗
- Kingdom:
- phage
Quality
92.2
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Ackermannviridae›
Kuttervirus›
Salmonella_phage_38
TaxID: 1654891
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-108
Domain cluster:
rep: IMGVR_UViG_3300022888_000153-3300022888-Ga0233428_10060381__D1-103
D2
medium
residues 109-310
Domain cluster:
rep: DNA_polymerase_catalytic_subunit__YP_401712__Human_gammaherpesvirus_4__10376__D288-457
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03104.26 best | DNA_pol_B_exo1 | 44.3 | 2.00e-11 | 62.9% | 31.4% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1q8iA03 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.86 | 47.0 | 4.95e-01 | 99.5% | 58.9% |
| 1d5aA02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.85 | 47.0 | 4.62e-01 | 100.0% | 51.2% |
| 3iayA03 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.85 | 53.0 | 5.18e-01 | 100.0% | 59.2% |
| 1noyB02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.83 | 60.0 | 5.72e-01 | 99.0% | 65.0% |
| 2gv9A03 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.78 | 54.0 | 5.25e-01 | 99.0% | 64.3% |
| 4qclA03 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.73 | 50.0 | 4.49e-01 | 100.0% | 51.7% |
| 4fvmA03 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.72 | 52.0 | 4.89e-01 | 99.5% | 63.2% |
| 3rvaA01 | 3.40.350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain | 0.61 | 36.0 | 4.07e-01 | 96.5% | 75.0% |
| 1ewqA02 | 3.30.420.110 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain | 0.59 | 25.0 | 3.14e-01 | 96.5% | 61.0% |
| 3cb6A01 | 3.40.350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain | 0.59 | 38.0 | 4.07e-01 | 96.5% | 73.7% |
| 2iw2A01 | 3.40.350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain | 0.58 | 38.0 | 4.02e-01 | 96.5% | 72.8% |
| 2czrA01 | 3.40.1350.70 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › TBP-interacting protein, N-terminal domain | 0.56 | 24.0 | 3.23e-01 | 76.7% | 74.5% |
| 3ig4A01 | 3.40.350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain | 0.55 | 38.0 | 4.10e-01 | 96.5% | 82.4% |
ECOD (73)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5035328 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.87 | 47.0 | 4.45e-01 | 100.0% | 46.0% |
| 4966854 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.86 | 44.0 | 3.55e-01 | 100.0% | 28.3% |
| 4452101 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.86 | 48.0 | 4.65e-01 | 100.0% | 50.5% |
| 5029084 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.86 | 48.0 | 4.64e-01 | 100.0% | 49.8% |
| 4972474 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.86 | 52.0 | 3.45e-01 | 100.0% | 18.1% |
| 5076410 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.86 | 45.0 | 3.54e-01 | 100.0% | 28.1% |
| 4022366 | 2484.1.1.161 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.85 | 53.0 | 3.55e-01 | 100.0% | 19.7% |
| 4990754 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.85 | 44.0 | 4.27e-01 | 100.0% | 46.2% |
| 5056578 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.85 | 48.0 | 4.18e-01 | 100.0% | 38.6% |
| 4504110 | 2484.1.1.197 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1, DNA_pol_B_exo2 | 0.85 | 48.0 | 3.67e-01 | 100.0% | 27.2% |
| 3368695 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.85 | 53.0 | 4.09e-01 | 100.0% | 32.3% |
| 4982659 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.85 | 44.0 | 3.56e-01 | 100.0% | 29.4% |
| 4953654 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.85 | 49.0 | 4.01e-01 | 100.0% | 34.1% |
| 3558197 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.85 | 52.0 | 4.83e-01 | 99.5% | 51.0% |
| None | — | 0.85 | 52.0 | 3.55e-01 | 100.0% | 19.8% | |
| 5023018 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.84 | 54.0 | 5.32e-01 | 100.0% | 61.4% |
| 3605750 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.84 | 53.0 | 3.30e-01 | 100.0% | 14.0% |
| 3802227 | 2484.1.1.197 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1, DNA_pol_B_exo2 | 0.84 | 53.0 | 3.37e-01 | 100.0% | 15.0% |
| 4649118 | 2484.1.1.197 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1, DNA_pol_B_exo2 | 0.84 | 53.0 | 4.08e-01 | 100.0% | 32.2% |
| 4981192 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.84 | 43.0 | 3.96e-01 | 100.0% | 40.4% |
| 4942685 | 304.48.1.3 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B | 0.84 | 48.0 | 3.50e-01 | 100.0% | 23.5% |
| 11143 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.84 | 60.0 | 4.74e-01 | 100.0% | 39.5% |
| 3798596 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.83 | 52.0 | 5.04e-01 | 100.0% | 56.4% |
| None | — | 0.83 | 52.0 | 3.37e-01 | 100.0% | 15.9% | |
| 3619240 | 304.48.1.59 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B_exo1, DNA_pol_B_exo2 | 0.83 | 52.0 | 3.41e-01 | 100.0% | 16.7% |
| None | — | 0.83 | 52.0 | 3.34e-01 | 100.0% | 15.2% | |
| 3584771 | 2484.1.1.197 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1, DNA_pol_B_exo2 | 0.83 | 52.0 | 4.50e-01 | 99.5% | 43.1% |
| None | — | 0.83 | 52.0 | 4.17e-01 | 100.0% | 35.1% | |
| 3710418 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.83 | 52.0 | 4.13e-01 | 100.0% | 34.1% |
| 4799493 | 2.1.1.25 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 | 0.83 | 48.0 | 6.20e-01 | 95.0% | 95.9% |
| 5043498 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.82 | 45.0 | 3.50e-01 | 100.0% | 27.7% |
| 5054032 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.82 | 48.0 | 3.82e-01 | 100.0% | 31.6% |
| 4932453 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.81 | 49.0 | 4.14e-01 | 100.0% | 38.7% |
| 3825992 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.79 | 53.0 | 4.84e-01 | 100.0% | 54.4% |
| 3794217 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.79 | 52.0 | 3.74e-01 | 100.0% | 25.7% |
| 4997716 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.79 | 46.0 | 4.44e-01 | 100.0% | 52.4% |
| 4891100 | 2484.1.1.161 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.78 | 55.0 | 4.91e-01 | 99.5% | 53.7% |
| 3784398 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.77 | 54.0 | 4.92e-01 | 100.0% | 55.7% |
| 3705562 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.77 | 52.0 | 3.49e-01 | 99.5% | 20.9% |
| 4944521 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.77 | 47.0 | 4.68e-01 | 100.0% | 58.6% |
| 3471270 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.77 | 49.0 | 4.12e-01 | 96.5% | 41.3% |
| 3206356 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.76 | 53.0 | 4.15e-01 | 100.0% | 36.0% |
| 3214818 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.76 | 49.0 | 3.88e-01 | 100.0% | 34.9% |
| 3684974 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.76 | 53.0 | 3.59e-01 | 100.0% | 21.8% |
| 4029124 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.76 | 49.0 | 4.46e-01 | 98.5% | 50.4% |
| 3168836 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.75 | 52.0 | 4.78e-01 | 100.0% | 55.7% |
| 4023334 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.75 | 53.0 | 4.65e-01 | 100.0% | 51.8% |
| 4024811 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.74 | 50.0 | 4.41e-01 | 100.0% | 49.3% |
| 3256261 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.74 | 50.0 | 4.53e-01 | 98.5% | 53.7% |
| 3404726 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.74 | 53.0 | 4.56e-01 | 100.0% | 49.8% |
| 5048995 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.74 | 44.0 | 3.47e-01 | 100.0% | 31.7% |
| 3496492 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.73 | 54.0 | 4.65e-01 | 97.5% | 51.7% |
| 3692564 | 2.1.1.25 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 | 0.73 | 52.0 | 3.98e-01 | 100.0% | 35.6% |
| 4874454 | 2.1.1.25 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 | 0.73 | 50.0 | 4.48e-01 | 99.5% | 52.8% |
| 3193111 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.72 | 51.0 | 4.06e-01 | 100.0% | 38.7% |
| 3606428 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.72 | 50.0 | 4.70e-01 | 96.5% | 60.4% |
| 4323378 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.71 | 51.0 | 4.40e-01 | 100.0% | 50.7% |
| 3683241 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.68 | 51.0 | 4.30e-01 | 100.0% | 48.4% |
| 3492151 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.68 | 52.0 | 4.30e-01 | 100.0% | 47.6% |
| 3599368 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.64 | 41.0 | 3.83e-01 | 96.5% | 52.4% |
| 4495947 | 2484.3.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Creatinase/prolidase N-terminal domain › Creatinase/prolidase N-terminal domain › AMP_N | 0.60 | 38.0 | 4.17e-01 | 96.5% | 75.3% |
| 4442936 | 2484.3.1.5 ↗ | mixed a+b and a/b › Ribonuclease H-like › Creatinase/prolidase N-terminal domain › Creatinase/prolidase N-terminal domain › PepQ_N | 0.59 | 35.0 | 3.98e-01 | 94.6% | 75.5% |
| 1822623 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.57 | 55.0 | 4.86e-01 | 100.0% | 89.1% |
| 3216090 | 2484.3.1.3 ↗ | mixed a+b and a/b › Ribonuclease H-like › Creatinase/prolidase N-terminal domain › Creatinase/prolidase N-terminal domain › FACT-Spt16_Nlob | 0.56 | 36.0 | 3.90e-01 | 96.5% | 74.7% |
| 3597964 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.54 | 52.0 | 4.44e-01 | 100.0% | 93.4% |
| 3167764 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.54 | 52.0 | 4.42e-01 | 100.0% | 92.8% |
| 3702504 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.54 | 52.0 | 4.47e-01 | 100.0% | 95.9% |
| 3466667 | 2484.1.1.161 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 51.0 | 3.44e-01 | 100.0% | 62.8% |
| 4002044 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.53 | 51.0 | 4.16e-01 | 100.0% | 82.4% |
| 1790898 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.52 | 50.0 | 4.47e-01 | 100.0% | 97.8% |
| 2822318 | 7510.1.1.2 ↗ | a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › PTA_PTB | 0.51 | 30.0 | 3.54e-01 | 98.0% | 84.0% |
| 4988803 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.50 | 48.0 | 3.76e-01 | 100.0% | 64.3% |
| 4468760 | 2484.1.1.153 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF1744 | 0.50 | 41.0 | 3.37e-01 | 98.0% | 50.0% |