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KR296693.1__AKJ73574.1__SP39_3__00003
Bact-VirKR296693.1__AKJ73574.1__SP39_3__00003
Identity
- Accession:
- KR296693 ↗
- Kingdom:
- phage
Quality
86.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-33_106-174
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2fm7A00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.63 | 34.0 | 4.10e-01 | 73.4% | 80.6% |
| 3ej7H00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.62 | 34.0 | 4.27e-01 | 75.5% | 92.6% |
| 5g5gC03 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.62 | 31.0 | 3.16e-01 | 81.9% | 47.3% |
| 4uhwA09 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.60 | 32.0 | 3.25e-01 | 86.2% | 50.0% |
| 3focA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.59 | 47.0 | 3.37e-01 | 87.2% | 33.0% |
| 4c81A00 | 3.30.1330.50 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | 0.59 | 38.0 | 3.29e-01 | 85.1% | 39.7% |
| 5ucdA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.57 | 35.0 | 2.67e-01 | 95.7% | 24.6% |
| 3kd3A01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.57 | 34.0 | 2.92e-01 | 100.0% | 36.4% |
| 1r6uA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.55 | 46.0 | 3.41e-01 | 94.7% | 39.5% |
| 3olqA00 | 3.40.50.12370 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 39.0 | 2.73e-01 | 74.5% | 85.0% |
| 3m20A00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.54 | 34.0 | 4.04e-01 | 73.4% | 100.0% |
| 6ulxA01 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.54 | 38.0 | 3.86e-01 | 72.3% | 95.7% |
| 3hzrA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.54 | 45.0 | 3.34e-01 | 94.7% | 37.6% |
| 3t5sA00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.53 | 33.0 | 3.31e-01 | 77.7% | 58.8% |
| 3lkdA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 40.0 | 2.92e-01 | 81.9% | 33.3% |
| 4a8jF00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 38.0 | 2.88e-01 | 76.6% | 92.0% |
| 3mcaA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 40.0 | 3.42e-01 | 100.0% | 49.0% |
| 2hwwB00 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.52 | 36.0 | 3.10e-01 | 100.0% | 42.7% |
| 3p26A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 39.0 | 3.06e-01 | 100.0% | 34.7% |
| 3tnjA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.52 | 38.0 | 3.53e-01 | 77.7% | 63.6% |
| 2z3vA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.52 | 40.0 | 3.48e-01 | 80.9% | 65.7% |
| 3kanA00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.51 | 38.0 | 3.58e-01 | 79.8% | 91.5% |
| 2aamC00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.51 | 45.0 | 3.22e-01 | 100.0% | 53.5% |
| 6nklB00 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.51 | 37.0 | 3.33e-01 | 77.7% | 54.8% |
| 4zkdA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 39.0 | 2.97e-01 | 100.0% | 32.1% |
| 5djsA03 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.50 | 36.0 | 3.03e-01 | 76.6% | 44.6% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4284403 | 301.13.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › DegV | 0.63 | 38.0 | 3.41e-01 | 90.4% | 41.5% |
| None | — | 0.61 | 45.0 | 3.11e-01 | 78.7% | 76.1% | |
| 4122147 | 315.1.1.2 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase | 0.60 | 35.0 | 3.88e-01 | 75.5% | 72.0% |
| None | — | 0.59 | 43.0 | 2.99e-01 | 78.7% | 85.4% | |
| 4358227 | 2003.1.5.138 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › UPF0020+Methyltrans_SAM | 0.58 | 43.0 | 2.69e-01 | 78.7% | 45.0% |
| 4551619 | 2003.1.5.259 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › UPF0020, Cons_hypoth95, Methyltrans_SAM | 0.58 | 43.0 | 2.71e-01 | 78.7% | 48.7% |
| 4639416 | 2003.1.5.74 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltrans_SAM | 0.58 | 42.0 | 2.94e-01 | 78.7% | 76.2% |
| 4478613 | 2007.5.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase | 0.57 | 43.0 | 3.34e-01 | 100.0% | 36.2% |
| None | — | 0.56 | 42.0 | 2.91e-01 | 78.7% | 79.1% | |
| None | — | 0.55 | 42.0 | 2.91e-01 | 80.9% | 79.4% | |
| 4252143 | 2003.1.5.74 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltrans_SAM | 0.55 | 42.0 | 2.88e-01 | 80.9% | 77.0% |
| 4212999 | 2003.1.5.259 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › UPF0020, Cons_hypoth95, Methyltrans_SAM | 0.55 | 41.0 | 2.57e-01 | 78.7% | 46.6% |
| 3890543 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 44.0 | 3.16e-01 | 100.0% | 29.6% |
| 5044895 | 2007.2.1.6 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › Flavodoxin_5 | 0.55 | 44.0 | 3.67e-01 | 100.0% | 49.1% |
| 3892882 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.54 | 44.0 | 3.60e-01 | 100.0% | 48.2% |
| 3877997 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.54 | 44.0 | 3.14e-01 | 100.0% | 30.4% |
| 3631027 | 232.1.1.3 ↗ | a+b duplicates or obligate multimers › Pentein › Pentein › Pentein › PAD | 0.54 | 42.0 | 2.87e-01 | 86.2% | 61.6% |
| 1260958 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.53 | 39.0 | 3.30e-01 | 76.6% | 59.1% |
| 3192179 | 2004.1.1.414 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 | 0.53 | 40.0 | 3.07e-01 | 100.0% | 33.0% |
| 4021917 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.52 | 39.0 | 2.85e-01 | 100.0% | 26.6% |
| 3100136 | 109.1.1.10 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › HMW1C_N | 0.52 | 41.0 | 3.58e-01 | 88.3% | 61.7% |
| 4375978 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.52 | 44.0 | 4.31e-01 | 96.8% | 90.5% |
| 3686781 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.51 | 38.0 | 2.96e-01 | 100.0% | 34.4% |
| 3935207 | 2002.1.1.13 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red | 0.51 | 36.0 | 2.72e-01 | 73.4% | 66.4% |
| 4873716 | 315.1.1.1 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › MIF | 0.50 | 37.0 | 3.52e-01 | 78.7% | 91.3% |
D2
high
residues 36-103
Domain cluster:
rep: LC483177.1__BBK09340.1__X__00226__D24-85