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KR296693.1__AKJ73575.1__SP39_4__00004

Bact-Vir

KR296693.1__AKJ73575.1__SP39_4__00004

Identity

Accession:
KR296693 ↗
Kingdom:
phage

Quality

93.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Salmonella_phage_39

TaxID: 1654892

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-52
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2x3lB02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.58 48.0 3.22e-01 100.0% 26.9%
3caiA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.55 44.0 2.96e-01 100.0% 20.6%
2lfpA01 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.53 36.0 2.80e-01 73.1% 35.3%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3416420 2006.1.4.52 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PF27698 0.59 52.0 3.01e-01 100.0% 19.7%
5000691 7573.1.1.1 ↗ a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran 0.54 41.0 3.09e-01 92.3% 65.0%
4926886 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.52 38.0 2.94e-01 80.8% 51.9%
3677334 2007.5.1.20 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › PC-Esterase,PMR5N 0.52 41.0 2.52e-01 92.3% 37.0%
5047918 7592.1.1.0 ↗ a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains 0.51 41.0 3.25e-01 98.1% 45.4%
4938945 7592.1.1.3 ↗ a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › DUF6293_N 0.51 40.0 3.08e-01 96.2% 97.9%
D2 high residues 58-177
PDB
Domain cluster: rep: KJ534580.1__AHX01154.1__M316_0089__00089__D138-169_223-347
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3tjmA02 1.10.1470.20 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › Fatty acid synthase; domain 2 0.65 43.0 4.79e-01 82.5% 88.9%
1c0wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 28.0 3.46e-01 90.8% 64.4%
6opmD01 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.58 46.0 3.68e-01 85.0% 56.3%
1c7uA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.57 21.0 2.82e-01 87.5% 60.3%
8d3mA02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.56 45.0 3.63e-01 87.5% 60.0%
2o5hA00 1.10.3510.10 Mainly Alpha › Orthogonal Bundle › NMB0513-like › NMB0513-like 0.54 37.0 3.69e-01 70.8% 99.2%
7kfuC02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.54 45.0 3.63e-01 90.0% 52.8%
7fsfA02 3.30.56.80 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.53 31.0 3.76e-01 86.7% 95.7%
1guxB00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 44.0 4.25e-01 100.0% 78.0%
2pmzK00 3.90.940.10 Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › RNA polymerase subunit, RPB6/omega 0.50 29.0 3.35e-01 87.5% 80.5%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4942265 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 26.0 3.01e-01 90.0% 52.9%
4022146 101.1.2.520 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7779 0.56 36.0 3.92e-01 96.7% 76.0%
5061575 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 36.0 3.89e-01 96.7% 82.0%
3882050 102.1.1.106 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › PF27242 0.53 41.0 4.40e-01 95.0% 100.0%
5037669 3239.1.1.1 ↗ alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.51 41.0 3.10e-01 87.5% 40.3%
3904051 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.51 35.0 3.78e-01 73.3% 85.0%