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KR296694.1__AKJ73462.1__SP40_21__00021

Bact-Vir

KR296694.1__AKJ73462.1__SP40_21__00021

Identity

Accession:
KR296694 ↗
Kingdom:
phage

Quality

85.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Salmonella_phage_40

TaxID: 1654893

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-161
PDB
Domain cluster: rep: KT934943.1__ALM02446.1__KB57_053__00053__D405-516
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2b0rB00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.69 49.0 4.91e-01 99.3% 70.9%
1k8fA00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.65 52.0 5.20e-01 100.0% 82.2%
1k4zA00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.64 52.0 5.14e-01 100.0% 82.8%
4c2lA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.64 59.0 4.39e-01 100.0% 66.4%
3n6zA01 2.160.20.110 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.63 58.0 4.79e-01 100.0% 70.9%
4nk6A00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.62 56.0 4.03e-01 96.7% 65.3%
3grhA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.62 57.0 4.19e-01 100.0% 72.8%
2bm5B00 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.60 51.0 4.83e-01 100.0% 76.1%
5c1cA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.58 53.0 4.22e-01 100.0% 72.6%
1igrA01 3.80.20.20 Alpha Beta › Alpha-Beta Horseshoe › 24 nucleotide stem-loop, u2 snrnp hairpin iv. U2 a'; Chain A › Receptor L-domain 0.57 52.0 4.86e-01 100.0% 92.4%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1714446 207.2.1.66 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › WcaM 0.94 91.0 6.12e-01 100.0% 32.1%
3391275 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.79 45.0 5.30e-01 87.5% 80.0%
4020264 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.72 47.0 5.51e-01 97.4% 94.3%
3717205 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.68 57.0 3.85e-01 100.0% 25.7%
3844962 207.6.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C 0.67 48.0 5.36e-01 87.5% 95.0%
4121946 207.4.1.2 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › CAP_C 0.65 51.0 5.06e-01 100.0% 78.7%
3680585 207.2.1.3 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_4 0.64 59.0 5.04e-01 100.0% 68.5%
4028157 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.63 47.0 4.95e-01 100.0% 86.7%
3331539 207.1.1.97 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_RPS2 0.61 56.0 4.87e-01 98.7% 75.2%
4851734 2004.1.1.565 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › LRR_1, LRR_8 0.57 50.0 4.87e-01 100.0% 87.3%
D2 high residues 203-292
PDB
Domain cluster: rep: LN878149.1__CUH74616.1__X__00041__D773-859