←Back to structures
KR296694.1__AKJ73511.1__SP40_70__00070
Bact-VirKR296694.1__AKJ73511.1__SP40_70__00070
Identity
- Accession:
- KR296694 ↗
- Kingdom:
- phage
Quality
90.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 75-137
Domain cluster:
rep: helicase-primase_helicase_subunit__YP_009342401__Spheniscid_alphaherpesvirus_1__2560777__D779-840
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4n0rA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.55 | 40.0 | 2.65e-01 | 79.4% | 39.0% |
| 3io5A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 40.0 | 2.74e-01 | 81.0% | 24.4% |
| 2w4lB00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.55 | 40.0 | 3.07e-01 | 79.4% | 33.8% |
| 2qmaA03 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.53 | 39.0 | 2.71e-01 | 82.5% | 28.4% |
| 4obvA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.51 | 41.0 | 2.96e-01 | 100.0% | 68.1% |
| 4x00A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 41.0 | 2.84e-01 | 100.0% | 85.0% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3267758 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.91 | 83.0 | 6.31e-01 | 100.0% | 45.9% |
| 3789466 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.90 | 81.0 | 5.89e-01 | 100.0% | 39.4% |
| 3777141 | 2004.1.1.298 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Herpes_Helicase | 0.90 | 80.0 | 5.98e-01 | 100.0% | 42.1% |
| 3363137 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.90 | 80.0 | 6.12e-01 | 100.0% | 45.2% |
| 3882209 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.89 | 80.0 | 6.10e-01 | 100.0% | 45.2% |
| 3662519 | 2004.1.1.62 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Viral_helicase1 | 0.89 | 72.0 | 6.07e-01 | 93.7% | 54.0% |
| 3605939 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.89 | 81.0 | 6.17e-01 | 100.0% | 45.9% |
| 3610095 | 2004.1.1.298 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Herpes_Helicase | 0.89 | 79.0 | 5.66e-01 | 100.0% | 35.9% |
| 3372759 | 2004.1.1.135 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PIF1 | 0.88 | 74.0 | 4.69e-01 | 88.9% | 23.0% |
| 3600234 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.88 | 78.0 | 5.58e-01 | 100.0% | 35.9% |
| 3653111 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.87 | 79.0 | 7.09e-01 | 96.8% | 79.8% |
| 4610954 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.87 | 67.0 | 5.35e-01 | 84.1% | 44.3% |
| 3372829 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.87 | 63.0 | 4.69e-01 | 76.2% | 39.3% |
| 3682236 | 2004.1.1.496 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Viral_helicase1, UvrD_C_2 | 0.86 | 72.0 | 5.11e-01 | 88.9% | 44.1% |
| 3890170 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.86 | 77.0 | 5.82e-01 | 100.0% | 43.6% |
| 3648251 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.86 | 72.0 | 4.79e-01 | 88.9% | 34.5% |
| 3242523 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.86 | 72.0 | 5.51e-01 | 88.9% | 43.1% |
| 3891480 | 2004.1.1.135 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PIF1 | 0.86 | 76.0 | 4.65e-01 | 100.0% | 17.2% |
| None | — | 0.85 | 68.0 | 4.31e-01 | 84.1% | 27.4% | |
| 3656784 | 2004.1.1.62 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Viral_helicase1 | 0.84 | 76.0 | 5.36e-01 | 98.4% | 45.6% |
| 3601738 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.84 | 75.0 | 5.92e-01 | 100.0% | 49.6% |
| 3370015 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.83 | 78.0 | 5.43e-01 | 100.0% | 37.6% |
| 3305691 | 2004.1.1.298 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Herpes_Helicase | 0.83 | 78.0 | 5.62e-01 | 100.0% | 41.9% |
| 3719002 | 2004.1.1.203 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C_2 | 0.83 | 74.0 | 5.68e-01 | 100.0% | 45.9% |
| 3807611 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.82 | 76.0 | 5.58e-01 | 100.0% | 41.3% |
| 3591776 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.82 | 74.0 | 5.50e-01 | 100.0% | 40.6% |
| 3596401 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.80 | 71.0 | 5.50e-01 | 100.0% | 45.9% |
| 3676955 | 2004.1.1.203 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C_2 | 0.80 | 74.0 | 5.25e-01 | 100.0% | 45.1% |
| 3362146 | 2004.1.1.135 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PIF1 | 0.76 | 68.0 | 4.67e-01 | 98.4% | 33.5% |
| 3710008 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.75 | 64.0 | 4.81e-01 | 96.8% | 40.6% |
| 3307009 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.72 | 63.0 | 4.96e-01 | 98.4% | 50.0% |
| 3640501 | 2007.2.3.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc | 0.58 | 44.0 | 3.06e-01 | 84.1% | 56.8% |
| 3903964 | 2007.9.1.7 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › NPHP3 | 0.58 | 42.0 | 3.17e-01 | 79.4% | 65.1% |
| 4591792 | 2496.1.1.2 ↗ | a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › STAS | 0.58 | 42.0 | 3.35e-01 | 82.5% | 44.7% |
| 3717187 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.55 | 40.0 | 2.94e-01 | 81.0% | 31.6% |
| 5033713 | 301.7.1.7 ↗ | a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like › FIST | 0.54 | 37.0 | 2.76e-01 | 74.6% | 86.2% |
| 3463813 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.54 | 43.0 | 2.82e-01 | 98.4% | 44.6% |
| 4978728 | 7574.1.1.0 ↗ | a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) | 0.53 | 37.0 | 2.80e-01 | 77.8% | 50.8% |
| 3421589 | 207.1.1.79 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box | 0.53 | 43.0 | 2.73e-01 | 100.0% | 49.3% |
| 3208108 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.52 | 36.0 | 2.86e-01 | 74.6% | 50.0% |
D2
medium
residues 1-67
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xk0A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.85 | 42.0 | 4.20e-01 | 100.0% | 47.8% |
| 2mysA01 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.82 | 41.0 | 4.79e-01 | 100.0% | 68.8% |
| 2a5hA03 | 6.20.120.40 | Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.70 | 34.0 | 3.54e-01 | 85.1% | 51.6% |
| 1jegA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.70 | 39.0 | 4.08e-01 | 100.0% | 60.0% |
| 2k57A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 37.0 | 4.10e-01 | 100.0% | 69.1% |
| 4my2A02 | 2.10.90.10 | Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines | 0.65 | 48.0 | 4.40e-01 | 80.6% | 67.0% |
| 4jphB00 | 2.10.90.10 | Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines | 0.63 | 51.0 | 4.41e-01 | 91.0% | 94.6% |
| 1m4uA01 | 2.10.90.10 | Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines | 0.61 | 41.0 | 3.35e-01 | 80.6% | 36.4% |
| 2ra2B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 35.0 | 3.75e-01 | 100.0% | 65.5% |
| 1novA00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 47.0 | 3.10e-01 | 100.0% | 46.6% |
| 1f8vC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 44.0 | 2.93e-01 | 95.5% | 84.2% |
| 2rcnA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 42.0 | 4.39e-01 | 100.0% | 91.8% |
| 3gw6D02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 29.0 | 2.27e-01 | 89.6% | 21.7% |
| 2hbpA00 | 2.30.30.700 | Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 | 0.52 | 39.0 | 3.95e-01 | 97.0% | 80.3% |
| 7r5mA01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.50 | 35.0 | 2.42e-01 | 73.1% | 35.9% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1746358 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.94 | 78.0 | 6.44e-01 | 100.0% | 53.7% |
| 4101587 | 4.1.1.140 ↗ | beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom | 0.92 | 67.0 | 5.62e-01 | 100.0% | 48.6% |
| 3022070 | 4.1.1.140 ↗ | beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom | 0.86 | 75.0 | 6.14e-01 | 100.0% | 54.4% |
| 3385654 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.84 | 73.0 | 5.85e-01 | 100.0% | 51.7% |
| 3023952 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.82 | 75.0 | 6.13e-01 | 100.0% | 57.5% |
| 3892944 | 385.1.1.8 ↗ | few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines › DAN | 0.74 | 52.0 | 4.87e-01 | 74.6% | 61.3% |
| 3883177 | 385.1.1.9 ↗ | few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines › Sclerostin | 0.71 | 47.0 | 4.02e-01 | 88.1% | 41.8% |
| 4519278 | 391.1.2.1 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC | 0.71 | 53.0 | 3.31e-01 | 80.6% | 14.5% |
| 4269264 | 2.1.1.60 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgI_N | 0.66 | 39.0 | 4.69e-01 | 97.0% | 88.9% |
| 3890176 | 385.1.1.11 ↗ | few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines › IL17 | 0.63 | 41.0 | 3.53e-01 | 82.1% | 41.9% |
| 4551865 | 391.1.2.27 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › Cys_knot | 0.62 | 48.0 | 3.69e-01 | 82.1% | 37.3% |
| 4044630 | 385.1.1.8 ↗ | few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines › DAN | 0.62 | 50.0 | 4.48e-01 | 91.0% | 98.0% |
| 3701641 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.62 | 48.0 | 3.23e-01 | 97.0% | 21.9% |
| 4438753 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.61 | 42.0 | 2.82e-01 | 82.1% | 18.1% |
| 3797440 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.60 | 54.0 | 3.87e-01 | 100.0% | 71.3% |
| 3623409 | 11.1.5.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › T-box | 0.60 | 53.0 | 3.82e-01 | 100.0% | 71.3% |
| 2330653 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.58 | 35.0 | 3.18e-01 | 80.6% | 42.6% |
| 3608173 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.57 | 51.0 | 3.15e-01 | 100.0% | 90.1% |
| 5005814 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.56 | 40.0 | 4.63e-01 | 97.0% | 100.0% |
| 3932950 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.54 | 48.0 | 3.00e-01 | 98.5% | 63.9% |
| 3474846 | 10.35.1.1 ↗ | beta sandwiches › jelly-roll › ER-derived vesicles protein Erv41p lumenal domain › ER-derived vesicles protein Erv41p lumenal domain › COPIIcoated_ERV,ERGIC_N | 0.54 | 47.0 | 3.17e-01 | 100.0% | 34.1% |
| 3387999 | 2003.2.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 | 0.53 | 40.0 | 2.74e-01 | 79.1% | 90.0% |
| 3537236 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 39.0 | 3.25e-01 | 82.1% | 69.2% |
| 2893546 | 385.1.1.11 ↗ | few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines › IL17 | 0.52 | 39.0 | 3.44e-01 | 80.6% | 55.2% |
| 3244177 | 11.1.1.934 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N, Arrestin_C | 0.52 | 42.0 | 2.80e-01 | 95.5% | 42.1% |
| 3260517 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.50 | 41.0 | 3.55e-01 | 98.5% | 74.2% |
| 3891357 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.50 | 40.0 | 2.37e-01 | 97.0% | 11.0% |
| 3509590 | 11.1.1.41 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C | 0.50 | 43.0 | 3.32e-01 | 100.0% | 75.6% |
| 5036086 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 39.0 | 3.73e-01 | 85.1% | 73.8% |