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KR296695.1__AKJ73306.1__SP41_17__00017

Bact-Vir

KR296695.1__AKJ73306.1__SP41_17__00017

Identity

Accession:
KR296695 ↗
Kingdom:
phage

Quality

86.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-144_192-204
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03864.23 best Phage_cap_E 51.3 1.30e-13 94.3% 43.9%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2e0zC03 3.30.2320.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain 0.77 47.0 5.96e-01 94.9% 100.0%
2pk8A00 3.30.2320.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain 0.77 47.0 5.94e-01 77.1% 100.0%
3dktA02 3.30.2320.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain 0.75 46.0 5.79e-01 95.5% 100.0%
6xgpB01 3.30.1930.10 Alpha Beta › 2-Layer Sandwich › capsid protein of prophage fold › capsid protein of prophage domain 0.70 55.0 5.93e-01 81.5% 100.0%
3bqwA02 3.30.1930.10 Alpha Beta › 2-Layer Sandwich › capsid protein of prophage fold › capsid protein of prophage domain 0.66 55.0 5.86e-01 86.6% 100.0%
3bjqA00 3.90.1690.10 Alpha Beta › Alpha-Beta Complex › phage-related protein like fold › phage-related protein like domain 0.63 59.0 4.68e-01 100.0% 92.2%
7p8na01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.62 24.0 3.13e-01 97.5% 60.2%
7y6oA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 31.0 3.92e-01 81.5% 90.7%
2j5wA02 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.52 31.0 3.21e-01 84.1% 60.0%
2r7eA02 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.52 30.0 3.26e-01 83.4% 65.0%
3kw8A02 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.52 34.0 3.64e-01 84.7% 76.7%
1sddB02 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.51 31.0 3.41e-01 83.4% 73.6%
1dpgA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.50 38.0 3.08e-01 78.3% 77.3%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4929755 2485.3.1.18 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 0.64 61.0 4.94e-01 100.0% 64.4%
3981522 298.4.1.0 a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E 0.64 33.0 3.90e-01 79.0% 70.0%
333200 2485.3.1.1 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_E 0.64 60.0 4.76e-01 100.0% 92.1%
184285 298.1.1.20 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › YceM-like_C 0.64 33.0 3.53e-01 84.7% 55.7%
3965498 2485.3.1.0 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.63 58.0 4.58e-01 100.0% 91.7%
4097188 298.4.1.2 a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › FliH 0.60 32.0 3.76e-01 78.3% 72.7%
3197067 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.56 25.0 3.59e-01 86.0% 95.4%
5038418 3156.1.1.3 beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Copper-bind 0.55 34.0 3.55e-01 82.8% 65.3%
1281340 11.1.1.1155 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF30327 0.53 23.0 2.99e-01 81.5% 67.7%
5039484 3156.1.1.0 beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related 0.53 30.0 3.43e-01 83.4% 73.3%
5040401 3156.1.1.0 beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related 0.51 32.0 3.54e-01 86.6% 78.4%
3358441 3156.1.1.6 beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu_bind_like 0.51 29.0 3.47e-01 84.7% 84.5%
3952691 3156.1.1.8 beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu-oxidase_2 0.51 31.0 3.44e-01 84.7% 75.8%
3553455 10.32.1.300 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Cu-oxidase_2 0.50 31.0 3.27e-01 83.4% 66.4%
3394143 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 34.0 3.68e-01 83.4% 81.5%
3462619 3156.1.1.6 beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu_bind_like 0.50 29.0 3.52e-01 84.7% 88.0%
D2 medium residues 153-186
PDB
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2l8oA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.70 51.0 3.40e-01 82.4% 35.4%
3hwuA00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.63 45.0 2.98e-01 76.5% 18.1%
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.63 44.0 3.62e-01 73.5% 43.1%
2hx0A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.61 44.0 3.15e-01 88.2% 60.6%
5umbA02 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.61 45.0 3.74e-01 94.1% 86.7%
4hpqB00 2.60.270.60 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Autophagy-related protein 31 0.60 42.0 3.06e-01 88.2% 23.5%
4of8A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 44.0 3.44e-01 100.0% 77.7%
4aqsA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 44.0 2.75e-01 91.2% 56.2%
3wqbA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 44.0 3.01e-01 100.0% 57.2%
1apyB00 3.60.20.30 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › (Glycosyl)asparaginase 0.58 43.0 3.00e-01 97.1% 21.3%
4jklA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 41.0 3.22e-01 88.2% 49.5%
3ecrB03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.57 48.0 3.43e-01 97.1% 51.0%
4qunA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.56 45.0 2.68e-01 97.1% 22.6%
2kd3A00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.56 40.0 3.14e-01 88.2% 77.3%
1k8kA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.56 41.0 3.27e-01 94.1% 75.0%
1kqfB02 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 41.0 2.79e-01 82.4% 65.7%
3f02B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.54 43.0 3.18e-01 91.2% 39.0%
3fetA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.54 42.0 2.81e-01 100.0% 35.2%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.54 41.0 2.62e-01 97.1% 61.9%
1s28A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.53 39.0 2.70e-01 85.3% 26.2%
4xr7F02 1.10.287.3700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 39.0 3.10e-01 91.2% 58.9%
2ltsA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 40.0 3.02e-01 88.2% 54.7%
2qlvB02 2.20.25.290 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.52 35.0 3.52e-01 100.0% 60.5%
2b9dA01 3.30.160.330 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 35.0 3.46e-01 70.6% 59.0%
2lpuA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.52 42.0 2.86e-01 100.0% 28.4%
1oi2A02 3.30.1180.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › Dihydroxyacetone kinase; domain 2 0.51 43.0 2.79e-01 97.1% 86.4%
3hm2A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 35.0 2.44e-01 91.2% 95.3%
1jcfA03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.51 38.0 3.10e-01 88.2% 76.3%
4f0qD01 2.30.280.20 Mainly Beta › Roll › PUA domain-like › 0.51 37.0 2.35e-01 94.1% 47.1%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3991703 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.70 52.0 4.28e-01 97.1% 42.9%
4004143 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.69 55.0 5.04e-01 97.1% 84.0%
3319564 219.1.1.113 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PF28979 0.68 51.0 3.42e-01 91.2% 27.5%
4860677 5.1.5.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N 0.68 51.0 2.89e-01 88.2% 15.7%
5009797 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.66 50.0 3.55e-01 91.2% 26.7%
3927968 11.1.1.9 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N 0.61 44.0 3.00e-01 82.4% 60.0%
3815492 2003.1.5.121 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DUF1442 0.60 45.0 2.82e-01 88.2% 28.8%
3443252 263.1.1.0 a+b three layers › SRF-like › SRF-like › SRF-like 0.60 47.0 4.41e-01 94.1% 73.3%
4015084 225.1.1.0 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.59 43.0 2.87e-01 85.3% 79.4%
3588046 304.55.1.14 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Y2_Tnp 0.58 42.0 2.61e-01 85.3% 31.2%
3183994 3385.1.1.2 beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 › PF27986 0.58 44.0 3.31e-01 85.3% 34.5%
4013484 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.58 39.0 2.49e-01 73.5% 13.7%
3598294 226.1.1.0 a+b two layers › POZ domain › POZ domain › POZ domain 0.57 39.0 2.72e-01 70.6% 25.6%
3969531 7581.1.1.0 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like 0.57 42.0 2.41e-01 85.3% 49.2%
3915702 3426.1.1.1 beta meanders › Telethonin › Telethonin › Telethonin › Telethonin 0.57 43.0 3.29e-01 85.3% 91.1%
1548765 225.1.1.0 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.56 44.0 3.15e-01 85.3% 88.2%
4018215 2003.1.3.4 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Lys_Orn_oxgnase 0.56 44.0 2.48e-01 97.1% 32.3%
4937952 206.1.3.3 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › PPDK_N 0.56 39.0 2.39e-01 79.4% 28.1%
3938507 7579.1.1.23 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › PAF-AH_p_II 0.56 38.0 2.22e-01 100.0% 6.1%
4990846 2005.1.1.10 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF 0.56 40.0 2.71e-01 85.3% 71.5%
3491874 5.1.4.254 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_NOL10_N 0.55 42.0 2.48e-01 100.0% 18.4%
3454185 207.1.1.57 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRRNT_2,LRR_4,LRR_6,LRR_8 0.54 42.0 2.31e-01 94.1% 5.3%
5022074 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.53 38.0 2.54e-01 91.2% 89.5%
3986356 304.55.1.14 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Y2_Tnp 0.53 36.0 2.26e-01 88.2% 56.1%
3397739 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 38.0 3.16e-01 97.1% 62.4%
3060306 225.1.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.52 44.0 3.12e-01 91.2% 80.6%
3292891 2003.1.5.121 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DUF1442 0.52 36.0 2.38e-01 91.2% 23.3%
5049822 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.52 39.0 3.72e-01 94.1% 68.9%
4969039 2005.1.1.10 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF 0.52 42.0 2.74e-01 100.0% 31.4%
3718119 2004.1.1.348 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SbcC_Walker_B 0.51 36.0 2.48e-01 88.2% 20.0%
3627036 223.1.1.98 a+b three layers › Profilin-like › sensor domains › sensor domains › PF30670 0.51 36.0 2.89e-01 94.1% 91.0%
3410157 3926.1.1.0 alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D 0.50 34.0 2.33e-01 73.5% 17.3%
3551222 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 36.0 2.44e-01 85.3% 18.9%
3587931 10.12.1.1 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.50 35.0 2.54e-01 88.2% 20.0%