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KR534323.1__AKO60959.1__X__00058

Bact-Vir

KR534323.1__AKO60959.1__X__00058

Identity

Accession:
KR534323 ↗
Kingdom:
phage

Quality

71.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-82
PDB
Domain cluster: representative
CATH (61)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dt5B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 54.0 5.59e-01 98.8% 86.3%
3to7A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 54.0 5.41e-01 97.5% 80.2%
5trdA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 52.0 5.15e-01 82.5% 75.0%
3qyfA03 1.10.10.1690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Uncharacterised CRISPR-associated protein family, UPF0236 0.69 43.0 4.77e-01 82.5% 82.0%
1z6tA04 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 49.0 4.84e-01 88.7% 74.1%
2vxzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 50.0 5.39e-01 88.7% 98.5%
3lcvB02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.66 46.0 3.37e-01 81.2% 28.7%
2qvoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 50.0 4.90e-01 87.5% 75.9%
1u5tA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 50.0 5.20e-01 86.3% 97.3%
6vudA02 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.64 45.0 4.70e-01 88.7% 78.7%
1jg8A02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.64 42.0 3.99e-01 75.0% 55.2%
3lmmB05 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 45.0 4.96e-01 81.2% 100.0%
2v9vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 44.0 4.93e-01 82.5% 98.3%
4ad9A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 56.0 5.52e-01 100.0% 98.8%
4b0zA00 1.25.40.990 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.63 56.0 4.07e-01 100.0% 70.9%
3qphA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 43.0 4.08e-01 87.5% 58.8%
6uvuA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 47.0 4.31e-01 87.5% 61.5%
3l09A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 47.0 4.66e-01 81.2% 78.6%
2wb6A00 3.90.1150.90 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.62 50.0 4.52e-01 90.0% 97.4%
3gw2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 44.0 4.22e-01 82.5% 64.5%
2hr3D02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 45.0 4.85e-01 86.3% 100.0%
4asnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 47.0 4.59e-01 83.7% 74.4%
2dk8A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 46.0 4.98e-01 88.7% 100.0%
7txnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 44.0 4.32e-01 83.7% 68.9%
2v8pA02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.61 35.0 3.12e-01 70.0% 39.1%
2ccqA00 1.20.58.2190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 51.0 4.74e-01 92.5% 73.7%
1p6rA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 44.0 4.45e-01 83.7% 76.8%
1ef0B02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.60 50.0 3.83e-01 92.5% 81.4%
7snsB01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 42.0 3.36e-01 80.0% 37.0%
3fx3B02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 45.0 4.29e-01 85.0% 69.5%
3f6oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 42.0 4.05e-01 83.7% 65.9%
4n3pA02 3.65.10.10 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain 0.59 49.0 3.69e-01 93.8% 83.8%
2k5tA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.59 43.0 3.71e-01 78.8% 61.7%
7m0oA02 3.65.10.10 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain 0.58 42.0 3.26e-01 76.2% 69.0%
1xviA02 3.30.980.20 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Putative mannosyl-3-phosphoglycerate phosphatase; domain 2 0.58 44.0 4.25e-01 82.5% 78.7%
2pt7G02 3.30.1370.180 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.58 45.0 4.81e-01 85.0% 100.0%
2mh2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 43.0 4.67e-01 85.0% 100.0%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 44.0 4.17e-01 87.5% 67.3%
7xhzA01 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.57 41.0 3.61e-01 77.5% 93.5%
1wfxA02 3.20.170.30 Alpha Beta › Alpha-Beta Barrel › ADP-ribosylation fold › 0.56 41.0 3.98e-01 78.8% 68.9%
4mo0A00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.56 36.0 3.66e-01 71.2% 65.8%
4a6dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 47.0 4.52e-01 98.8% 83.0%
6u9hF02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.56 35.0 3.55e-01 72.5% 63.6%
2gqfA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 44.0 3.07e-01 85.0% 34.9%
4fqdA01 3.65.10.10 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain 0.55 41.0 3.13e-01 82.5% 91.2%
2kx2A00 3.30.780.30 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › 0.55 36.0 3.45e-01 76.2% 56.2%
5xyiK00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 42.0 4.10e-01 83.7% 75.6%
3f8kA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 39.0 3.42e-01 90.0% 46.6%
1dcoA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.55 38.0 3.59e-01 72.5% 63.6%
4kr6A01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.54 41.0 3.25e-01 82.5% 40.4%
1af5A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.54 41.0 3.58e-01 83.7% 56.3%
3jsyA02 3.90.105.20 Alpha Beta › Alpha-Beta Complex › Molybdopterin biosynthesis moea protein, domain 2 › Ribosomal protein L10, N-terminal fragment, domain II 0.53 32.0 3.25e-01 73.8% 60.0%
5ghrA02 3.10.310.30 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.53 42.0 3.63e-01 86.3% 96.8%
2pq0A02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.52 39.0 3.67e-01 80.0% 87.0%
1u02A02 3.30.70.1020 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trehalose-6-phosphate phosphatase related protein; domain 2 0.52 39.0 3.98e-01 78.8% 85.5%
2oh1C00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 41.0 3.35e-01 90.0% 94.2%
1lxjA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 37.0 3.48e-01 76.2% 61.2%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.52 41.0 3.23e-01 86.3% 86.8%
3ldgA01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.51 38.0 2.92e-01 80.0% 88.7%
2e9yB00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.51 44.0 2.94e-01 95.0% 36.9%
1bqnA02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.50 33.0 3.23e-01 80.0% 58.5%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3946906 101.1.2.683 alpha arrays › HTH › HTH › winged helix domain › AbiEi_3_N 0.75 45.0 5.40e-01 77.5% 96.0%
4382714 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 41.0 5.16e-01 70.0% 95.6%
3164346 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 47.0 5.47e-01 83.7% 94.5%
3562182 101.1.2.161 alpha arrays › HTH › HTH › winged helix domain › NOD2_WH 0.73 52.0 5.82e-01 83.7% 100.0%
3856178 101.1.2.304 alpha arrays › HTH › HTH › winged helix domain › E3_UFM1_ligase 0.72 50.0 5.66e-01 90.0% 96.7%
3530706 3736.1.1.0 alpha superhelices › NLRC4 helical domain HD2 › NLRC4 helical domain HD2 › NLRC4 helical domain HD2 0.71 49.0 3.76e-01 80.0% 31.7%
3954734 101.1.2.279 alpha arrays › HTH › HTH › winged helix domain › AbiEi_4 0.71 51.0 5.52e-01 92.5% 93.8%
3183990 101.1.2.122 alpha arrays › HTH › HTH › winged helix domain › CSN8_PSD8_EIF3K 0.70 54.0 4.90e-01 98.8% 61.9%
3262891 101.1.2.79 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_I_A49 0.69 50.0 5.37e-01 87.5% 93.8%
5046808 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 60.0 4.75e-01 98.8% 47.9%
3547456 101.1.2.161 alpha arrays › HTH › HTH › winged helix domain › NOD2_WH 0.67 51.0 5.42e-01 91.3% 94.3%
4315754 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 48.0 4.59e-01 92.5% 65.3%
3177309 101.1.2.7 alpha arrays › HTH › HTH › winged helix domain › HSF_DNA-bind 0.66 51.0 4.89e-01 82.5% 82.2%
3390367 101.1.2.122 alpha arrays › HTH › HTH › winged helix domain › CSN8_PSD8_EIF3K 0.66 41.0 4.60e-01 76.2% 85.0%
3529864 101.1.2.118 alpha arrays › HTH › HTH › winged helix domain › Dcc1 0.65 47.0 5.04e-01 82.5% 95.4%
5059709 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 43.0 4.73e-01 83.7% 91.7%
4968723 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 51.0 4.50e-01 97.5% 58.3%
4064079 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.63 42.0 4.30e-01 75.0% 70.0%
3595128 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.62 44.0 4.75e-01 85.0% 90.8%
3620006 109.4.1.142 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CSN8_PSD8_EIF3K 0.62 55.0 3.86e-01 100.0% 64.7%
4958759 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.61 42.0 4.27e-01 75.0% 71.2%
4028677 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 49.0 4.57e-01 90.0% 73.3%
4575751 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.61 47.0 4.54e-01 82.5% 73.3%
5047775 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.61 45.0 4.41e-01 77.5% 83.5%
5023531 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.61 42.0 4.23e-01 75.0% 71.2%
5024436 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 42.0 4.35e-01 78.8% 77.3%
4979405 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 43.0 4.71e-01 92.5% 100.0%
4887466 101.1.2.47 alpha arrays › HTH › HTH › winged helix domain › S10_plectin 0.60 35.0 3.94e-01 81.2% 77.6%
3178131 328.7.1.0 a+b two layers › IF3-like › Smr domain › Smr domain 0.60 50.0 4.48e-01 90.0% 80.9%
3799483 101.1.2.122 alpha arrays › HTH › HTH › winged helix domain › CSN8_PSD8_EIF3K 0.60 35.0 4.17e-01 70.0% 90.0%
3248361 328.7.1.0 a+b two layers › IF3-like › Smr domain › Smr domain 0.60 47.0 4.21e-01 83.7% 62.7%
1033426 320.4.1.3 a+b two layers › R3H domain-like › PUB domain › PUB domain › PUB 0.59 46.0 4.04e-01 92.5% 56.5%
3737203 109.4.1.142 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CSN8_PSD8_EIF3K 0.58 50.0 3.71e-01 100.0% 70.9%
5031556 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.58 41.0 4.20e-01 81.2% 76.2%
4152393 305.2.1.1 a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin_4a 0.58 40.0 3.70e-01 72.5% 57.1%
4943581 328.4.1.0 a+b two layers › IF3-like › YhbY-like › YhbY-like 0.57 39.0 4.00e-01 81.2% 72.5%
3445291 2003.1.5.80 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_24 0.56 40.0 2.82e-01 81.2% 22.6%
4967025 328.1.1.0 a+b two layers › IF3-like › AlbA-like › AlbA-like 0.56 43.0 3.45e-01 83.7% 92.1%
3951206 3012.1.1.1 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Trehalose_PPase 0.56 44.0 4.44e-01 85.0% 92.5%
4990517 7573.1.1.1 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran 0.56 48.0 3.51e-01 97.5% 95.6%
3740981 328.7.1.1 a+b two layers › IF3-like › Smr domain › Smr domain › Smr 0.56 44.0 4.36e-01 85.0% 84.7%
9288 2003.1.2.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › HI0933_like 0.55 44.0 3.29e-01 85.0% 44.8%
4332395 2003.1.2.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › HI0933_like 0.51 39.0 2.81e-01 82.5% 78.4%
4235437 306.3.1.1 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.51 40.0 3.83e-01 97.5% 73.7%