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KR534323.1__AKO61009.1__X__00108
Bact-VirKR534323.1__AKO61009.1__X__00108
Identity
- Accession:
- KR534323 ↗
- Kingdom:
- phage
Quality
88.1
mean pLDDT
Taxonomy
TaxID: 1654919
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-47
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2mhdA00 | 2.40.128.370 | Mainly Beta › Beta Barrel › Lipocalin › | 0.68 | 54.0 | 4.26e-01 | 95.7% | 86.4% |
| 2jn4A00 | 2.40.50.240 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NifT/FixU-like | 0.65 | 50.0 | 4.61e-01 | 91.3% | 74.2% |
| 2jmbA00 | 2.40.128.290 | Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein family Atu4866 | 0.64 | 52.0 | 4.53e-01 | 100.0% | 91.1% |
| 4iapA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.63 | 50.0 | 4.25e-01 | 100.0% | 71.7% |
| 3d89A00 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.63 | 43.0 | 3.15e-01 | 93.5% | 25.0% |
| 2q1fA04 | 2.60.220.10 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal | 0.63 | 44.0 | 3.16e-01 | 76.1% | 94.4% |
| 4hwmA00 | 2.40.128.500 | Mainly Beta › Beta Barrel › Lipocalin › YedD-like protein | 0.62 | 50.0 | 3.93e-01 | 100.0% | 68.4% |
| 1xf1A05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 49.0 | 3.88e-01 | 91.3% | 90.1% |
| 6grrB01 | 3.30.457.10 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Copper amine oxidase-like, N-terminal domain | 0.60 | 50.0 | 4.26e-01 | 95.7% | 78.5% |
| 1ei5A02 | 2.40.128.50 | Mainly Beta › Beta Barrel › Lipocalin › | 0.59 | 48.0 | 4.18e-01 | 100.0% | 69.5% |
| 6fucA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.59 | 44.0 | 3.73e-01 | 84.8% | 89.5% |
| 1xkiA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.59 | 46.0 | 3.58e-01 | 100.0% | 70.3% |
| 1mo9A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.58 | 48.0 | 3.20e-01 | 95.7% | 43.6% |
| 1ykdB01 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.57 | 45.0 | 3.08e-01 | 93.5% | 43.5% |
| 1lvlA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.57 | 48.0 | 3.13e-01 | 97.8% | 61.8% |
| 2g9gA00 | 2.60.120.1020 | Mainly Beta › Sandwich › Jelly Rolls › PAW domain | 0.54 | 45.0 | 3.07e-01 | 97.8% | 71.4% |
| 2xn1A01 | 2.70.98.60 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis | 0.54 | 39.0 | 2.48e-01 | 87.0% | 43.9% |
| 1ospO02 | 3.90.930.1 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › | 0.53 | 41.0 | 3.13e-01 | 100.0% | 40.4% |
| 2c35B02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 39.0 | 3.40e-01 | 95.7% | 95.6% |
| 3sqiA02 | 1.10.443.20 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Centromere DNA-binding protein complex CBF3 subunit, domain 2 | 0.52 | 38.0 | 2.42e-01 | 84.8% | 61.1% |
| 2nlvA00 | 3.30.310.110 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like | 0.52 | 41.0 | 3.16e-01 | 91.3% | 64.3% |
| 1xmtA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 38.0 | 3.17e-01 | 84.8% | 87.4% |
| 2lnjA00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.52 | 41.0 | 2.91e-01 | 95.7% | 90.6% |
| 2nvmA00 | 3.30.310.110 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like | 0.51 | 40.0 | 3.21e-01 | 91.3% | 67.3% |
| 2mnjB00 | 2.60.40.4160 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 36.0 | 3.06e-01 | 80.4% | 54.5% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3932501 | 220.4.1.0 ↗ | beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins | 0.77 | 66.0 | 4.77e-01 | 97.8% | 51.5% |
| 3925159 | 220.4.1.0 ↗ | beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins | 0.77 | 67.0 | 5.59e-01 | 100.0% | 85.0% |
| 3787255 | 6.1.1.0 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil | 0.67 | 56.0 | 4.29e-01 | 100.0% | 98.3% |
| 4960173 | 9.16.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Hypothetical protein Atu4866 › Hypothetical protein Atu4866 | 0.67 | 54.0 | 4.14e-01 | 97.8% | 98.3% |
| 184661 | 9.16.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Hypothetical protein Atu4866 › Hypothetical protein Atu4866 › Atu4866 | 0.64 | 52.0 | 4.53e-01 | 100.0% | 91.1% |
| 4409482 | 3158.1.1.2 ↗ | beta barrels › uncharacterized protein RUMGNA_01417 › uncharacterized protein RUMGNA_01417 › uncharacterized protein RUMGNA_01417 › DUF2777 | 0.63 | 48.0 | 4.16e-01 | 84.8% | 78.7% |
| 4580534 | 241.3.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › N domain of copper amine oxidase › N domain of copper amine oxidase › Cu_amine_oxidN1 | 0.62 | 47.0 | 3.70e-01 | 89.1% | 57.3% |
| 3588663 | 9.4.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains | 0.61 | 47.0 | 3.97e-01 | 95.7% | 100.0% |
| 4445317 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.60 | 49.0 | 3.53e-01 | 100.0% | 50.3% |
| 3777334 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.60 | 48.0 | 3.50e-01 | 100.0% | 50.9% |
| 5027663 | 244.2.1.11 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › DUF2283 | 0.58 | 46.0 | 4.14e-01 | 87.0% | 89.2% |
| 3262963 | 376.1.4.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR | 0.58 | 44.0 | 4.26e-01 | 87.0% | 85.5% |
| 4001570 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.57 | 43.0 | 3.69e-01 | 80.4% | 49.3% |
| 3293816 | 2.1.1.81 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rrp44_S1 | 0.55 | 44.0 | 3.65e-01 | 93.5% | 78.9% |
| 4591471 | 375.13.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Toprim_C_rpt | 0.55 | 41.0 | 3.96e-01 | 87.0% | 94.5% |
| 4157816 | 9002.1.1.0 ↗ | a/b three-layered sandwiches › ATP-grasp_6 › ATP-grasp_6 › ATP-grasp_6 | 0.54 | 40.0 | 4.12e-01 | 100.0% | 86.7% |
| 3692631 | 319.1.1.14 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HECT_2 | 0.53 | 40.0 | 3.21e-01 | 87.0% | 79.1% |
| 11068 | 213.1.1.35 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_CG | 0.52 | 38.0 | 3.17e-01 | 84.8% | 87.4% |
| 3274238 | 1021.1.1.2 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › RNA_hel_CTD | 0.51 | 39.0 | 3.48e-01 | 97.8% | 54.7% |
| 4814340 | 2004.1.1.134 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Podovirus_Gp16 | 0.51 | 41.0 | 2.80e-01 | 97.8% | 40.4% |