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KR534323.1__AKO61020.1__X__00119
Bact-VirKR534323.1__AKO61020.1__X__00119
Identity
- Accession:
- KR534323 ↗
- Kingdom:
- phage
Quality
74.1
mean pLDDT
Taxonomy
TaxID: 1654919
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-63_128-138
D2
high
residues 66-124
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5x8rr00 | 4.10.640.10 | Few Secondary Structures › Irregular › 30s Ribosomal Protein S18 › Ribosomal protein S18 | 0.56 | 39.0 | 3.85e-01 | 72.9% | 68.8% |
| 5lqdD01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.53 | 44.0 | 3.03e-01 | 100.0% | 24.6% |
| 2zt5A02 | 3.30.40.230 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.53 | 45.0 | 4.03e-01 | 94.9% | 98.8% |
| 5l92A00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.52 | 43.0 | 2.70e-01 | 100.0% | 16.6% |
| 3spcA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 42.0 | 3.42e-01 | 100.0% | 83.5% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3689543 | 3922.1.1.227 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › DUF6594 | 0.54 | 46.0 | 4.14e-01 | 98.3% | 83.5% |
| 5043789 | 101.1.2.70 ↗ | alpha arrays › HTH › HTH › winged helix domain › PqqD | 0.51 | 40.0 | 3.40e-01 | 89.8% | 87.0% |
D3
high
residues 140-250
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ulbA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.68 | 33.0 | 3.82e-01 | 91.0% | 62.7% |
| 2g18I00 | 3.40.1500.20 | Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › | 0.54 | 47.0 | 3.66e-01 | 94.6% | 76.1% |
| 3mmlF01 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.53 | 33.0 | 3.78e-01 | 91.9% | 87.3% |
| 3of4A00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.52 | 38.0 | 3.17e-01 | 78.4% | 78.7% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3869553 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.66 | 39.0 | 3.63e-01 | 94.6% | 47.4% |
| 5027156 | 3754.1.1.1 ↗ | alpha bundles › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Glycos_transf_4 | 0.58 | 47.0 | 3.42e-01 | 88.3% | 90.8% |
| 3502426 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.55 | 36.0 | 4.06e-01 | 75.7% | 88.2% |
| 3186404 | 3441.1.1.2 ↗ | alpha bundles › Bc28.1 › Bc28.1 › Bc28.1 › Pescadillo_N | 0.53 | 38.0 | 3.56e-01 | 74.8% | 75.7% |
| 4981316 | 3926.1.1.1 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D | 0.53 | 34.0 | 2.78e-01 | 81.1% | 36.0% |
| 3203832 | 871.1.1.1 ↗ | a+b two layers › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › TYW3 | 0.51 | 45.0 | 3.58e-01 | 97.3% | 87.0% |
| 3895743 | 3615.1.1.7 ↗ | alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › CD20 | 0.50 | 39.0 | 3.29e-01 | 100.0% | 48.4% |
D4
high
residues 257-308