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KR534323.1__AKO61051.1__X__00150
Bact-VirKR534323.1__AKO61051.1__X__00150
Identity
- Accession:
- KR534323 ↗
- Kingdom:
- phage
Quality
85.1
mean pLDDT
Taxonomy
TaxID: 1654919
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-48
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1b3qB03 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.68 | 42.0 | 3.68e-01 | 100.0% | 39.7% |
| 5ee2A00 | 2.40.160.90 | Mainly Beta › Beta Barrel › Porin › | 0.63 | 51.0 | 3.91e-01 | 100.0% | 77.9% |
| 4dnhA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.62 | 50.0 | 2.94e-01 | 93.2% | 29.6% |
| 3k1lA01 | 3.30.457.40 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › | 0.61 | 45.0 | 3.64e-01 | 86.4% | 39.1% |
| 3dkqA01 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.59 | 42.0 | 2.79e-01 | 100.0% | 18.7% |
| 4umwA02 | 2.70.150.10 | Mainly Beta › Distorted Sandwich › Calcium-transporting ATPase, cytoplasmic transduction domain A › Calcium-transporting ATPase, cytoplasmic transduction domain A | 0.58 | 39.0 | 3.16e-01 | 100.0% | 34.8% |
| 4p1mB01 | 3.30.160.880 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Cell division protein ZapA protomer, N-terminal domain | 0.57 | 37.0 | 3.74e-01 | 90.9% | 64.4% |
| 3na2A00 | 3.40.1570.20 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › | 0.56 | 47.0 | 3.39e-01 | 100.0% | 57.2% |
| 1pjqA02 | 3.30.160.110 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain | 0.55 | 39.0 | 4.19e-01 | 90.9% | 91.7% |
| 2kjwA00 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.55 | 45.0 | 3.64e-01 | 100.0% | 75.0% |
| 3zjaA01 | 2.60.40.1890 | Mainly Beta › Sandwich › Immunoglobulin-like › PCu(A)C copper chaperone | 0.55 | 40.0 | 3.15e-01 | 100.0% | 34.0% |
| 4ifeA02 | 3.30.420.240 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.54 | 45.0 | 2.96e-01 | 100.0% | 83.7% |
| 1fxkB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.54 | 33.0 | 2.53e-01 | 86.4% | 23.9% |
| 1dleB02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.53 | 43.0 | 3.16e-01 | 100.0% | 56.3% |
| 2pjyC00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.53 | 43.0 | 3.71e-01 | 100.0% | 68.4% |
| 2g7zA01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 42.0 | 2.98e-01 | 90.9% | 94.8% |
| 2o3iA01 | 3.40.1610.10 | Alpha Beta › 3-Layer(aba) Sandwich › CV3147-like fold › CV3147-like domain | 0.52 | 42.0 | 2.79e-01 | 100.0% | 60.6% |
| 5ujeA01 | 3.30.1760.10 | Alpha Beta › 2-Layer Sandwich › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, domain 2 › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, domain 2 | 0.52 | 40.0 | 3.23e-01 | 100.0% | 56.8% |
| 2bm0A02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.51 | 43.0 | 3.36e-01 | 100.0% | 53.4% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.51 | 43.0 | 3.49e-01 | 100.0% | 90.2% |
| 3gqcC01 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.51 | 38.0 | 2.97e-01 | 97.7% | 58.4% |
| 5fclE01 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.51 | 36.0 | 3.01e-01 | 79.5% | 83.3% |
| 1y8xB00 | 3.10.290.20 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › Ubiquitin-like 2 activating enzyme e1b. Chain: B, domain 3 | 0.51 | 40.0 | 3.36e-01 | 100.0% | 52.2% |
| 2vugA03 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.51 | 44.0 | 3.37e-01 | 97.7% | 99.0% |
| 7nz1G01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.51 | 40.0 | 3.30e-01 | 97.7% | 52.1% |
| 6ln0A02 | 1.10.8.1190 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Papain-like viral protease, thumb domain | 0.50 | 44.0 | 3.36e-01 | 100.0% | 51.0% |
| 4qtcA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.50 | 37.0 | 2.56e-01 | 88.6% | 97.9% |
| 2cw8A01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.50 | 41.0 | 2.89e-01 | 100.0% | 38.5% |
| 3df8A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 37.0 | 2.86e-01 | 84.1% | 90.8% |
| 3kuzB00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.50 | 43.0 | 3.24e-01 | 100.0% | 45.0% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3979086 | 4076.2.1.0 ↗ | a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like | 0.61 | 41.0 | 3.76e-01 | 100.0% | 48.4% |
| 4996956 | 221.7.1.0 ↗ | a+b two layers › beta-Grasp › E2-binding domain of E1 › E2-binding domain of E1 | 0.60 | 43.0 | 3.65e-01 | 100.0% | 43.8% |
| 3225453 | 390.1.1.0 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like | 0.59 | 41.0 | 3.62e-01 | 100.0% | 45.7% |
| 3457638 | 4357.1.1.6 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE_5 | 0.58 | 47.0 | 3.92e-01 | 100.0% | 76.7% |
| 3996720 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.58 | 47.0 | 4.20e-01 | 100.0% | 92.9% |
| 4940509 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.58 | 45.0 | 3.65e-01 | 95.5% | 95.0% |
| 3167568 | 101.46.1.0 ↗ | alpha arrays › HTH › Parafibromin N-terminal domain › Parafibromin N-terminal domain | 0.57 | 45.0 | 3.34e-01 | 88.6% | 71.7% |
| 3611697 | 1189.1.1.1 ↗ | alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › Trypan_glycop | 0.57 | 45.0 | 2.71e-01 | 90.9% | 86.5% |
| 3631486 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 39.0 | 2.45e-01 | 84.1% | 55.6% |
| 3349456 | 109.4.1.2927 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase | 0.56 | 45.0 | 2.90e-01 | 100.0% | 35.0% |
| 3700429 | 223.2.1.6 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN | 0.56 | 42.0 | 3.03e-01 | 90.9% | 26.4% |
| 4553664 | 7590.1.1.7 ↗ | a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › MID_MedPIWI | 0.55 | 40.0 | 2.54e-01 | 81.8% | 51.4% |
| 3307527 | 109.4.1.619 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DYW_deaminase | 0.55 | 46.0 | 3.34e-01 | 97.7% | 86.7% |
| 3448848 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.54 | 38.0 | 3.28e-01 | 100.0% | 43.8% |
| 3329353 | 3164.1.1.3 ↗ | few secondary structure elements › Zinc-binding domain in Junin virus envelope glycoprotein › Zinc-binding domain in Junin virus envelope glycoprotein › Zinc-binding domain in Junin virus envelope glycoprotein › DYW_deaminase | 0.54 | 42.0 | 3.21e-01 | 100.0% | 66.7% |
| 3704468 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.54 | 44.0 | 3.38e-01 | 95.5% | 90.9% |
| 3227659 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.54 | 42.0 | 3.43e-01 | 88.6% | 45.6% |
| 3343923 | 109.4.1.1156 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › E_motif | 0.54 | 45.0 | 2.81e-01 | 100.0% | 28.6% |
| 3821185 | 109.4.1.1476 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, DYW_deaminase, E_motif | 0.53 | 45.0 | 2.52e-01 | 97.7% | 17.9% |
| 3179859 | 2002.1.1.282 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PF26146 | 0.53 | 39.0 | 2.47e-01 | 90.9% | 14.3% |
| 3898196 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.52 | 44.0 | 4.17e-01 | 100.0% | 90.9% |
| 3242376 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.52 | 45.0 | 3.22e-01 | 100.0% | 35.4% |
| 3682973 | 109.4.1.2641 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2, DYW_deaminase, Eplus_motif | 0.52 | 40.0 | 2.55e-01 | 97.7% | 27.8% |
| 5048830 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.51 | 39.0 | 2.94e-01 | 86.4% | 81.6% |
| 3319860 | 109.4.1.2173 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, DYW_deaminase, Eplus_motif | 0.51 | 40.0 | 2.54e-01 | 97.7% | 28.9% |
| 3718648 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 39.0 | 3.10e-01 | 90.9% | 39.8% |
| 4471982 | 4081.1.1.5 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N | 0.51 | 42.0 | 2.75e-01 | 100.0% | 20.9% |
| 3874516 | 206.1.1.74 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr | 0.51 | 42.0 | 2.50e-01 | 93.2% | 37.4% |
| 3506203 | 375.1.1.202 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Tmemb_55A | 0.51 | 36.0 | 3.81e-01 | 93.2% | 94.3% |
| 4956696 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.51 | 40.0 | 3.53e-01 | 97.7% | 97.3% |
| 3289443 | 2003.1.2.18 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.51 | 35.0 | 2.17e-01 | 79.5% | 95.8% |
| 3715519 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.50 | 39.0 | 2.57e-01 | 88.6% | 20.5% |