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KR534323.1__AKO61082.1__X__00181

Bact-Vir

KR534323.1__AKO61082.1__X__00181

Identity

Accession:
KR534323 ↗
Kingdom:
phage

Quality

59.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Shandongvirus› Pseudoalteromonas_phage_H101

TaxID: 1654919

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 53-115
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gfgA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.71 57.0 4.06e-01 87.3% 75.9%
4oddA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.67 49.0 3.71e-01 77.8% 46.3%
4jglA00 2.40.128.530 Mainly Beta › Beta Barrel › Lipocalin › 0.67 49.0 3.71e-01 77.8% 41.4%
4wfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.67 48.0 3.62e-01 76.2% 44.4%
3zxjA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.66 58.0 3.74e-01 100.0% 90.1%
1e5pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.65 46.0 3.55e-01 76.2% 45.6%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.65 50.0 4.83e-01 87.3% 73.6%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.64 46.0 4.11e-01 77.8% 60.6%
3qwuA01 3.10.450.740 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 43.0 4.87e-01 71.4% 100.0%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.63 51.0 4.52e-01 87.3% 78.7%
4bq6F00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.63 48.0 3.68e-01 84.1% 80.5%
1w4bA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 46.0 3.23e-01 82.5% 69.5%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.62 44.0 4.31e-01 74.6% 79.1%
6c1zA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 47.0 3.72e-01 84.1% 80.4%
4o1sA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.61 55.0 3.99e-01 100.0% 97.6%
4l2iB00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.60 41.0 2.68e-01 71.4% 48.3%
3ecqA02 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.60 50.0 3.25e-01 90.5% 36.7%
3dtdD00 2.60.40.1880 Mainly Beta › Sandwich › Immunoglobulin-like › Invasion associated locus B (IalB) protein 0.60 45.0 3.46e-01 81.0% 65.5%
5mu3B00 3.40.50.12050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 44.0 3.25e-01 79.4% 33.1%
1ujrA01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.59 38.0 3.46e-01 71.4% 48.2%
3q6aB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 45.0 3.60e-01 85.7% 68.7%
2erfA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 39.0 2.82e-01 73.0% 64.6%
7d8gA01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.57 40.0 3.08e-01 76.2% 40.1%
2veaA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 46.0 3.76e-01 93.7% 69.2%
7uhyA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 44.0 2.91e-01 88.9% 25.2%
4ifaA01 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.56 46.0 3.13e-01 100.0% 86.0%
1ce7B01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 40.0 3.18e-01 77.8% 75.6%
6fucA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 39.0 3.60e-01 76.2% 91.9%
1e2tA03 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.55 41.0 3.41e-01 79.4% 65.0%
2nn5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 42.0 3.20e-01 87.3% 52.6%
1uliA01 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.55 43.0 2.89e-01 90.5% 45.8%
4lgvD02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.55 44.0 3.01e-01 93.7% 93.2%
4k2xB02 3.30.70.2450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 37.0 3.42e-01 85.7% 54.9%
1wqwA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.54 46.0 3.35e-01 96.8% 42.2%
2v73A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 37.0 2.73e-01 71.4% 73.8%
4usoA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 39.0 3.13e-01 79.4% 68.4%
2ecfA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.54 41.0 2.54e-01 88.9% 24.1%
2ra6C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 43.0 3.28e-01 87.3% 68.5%
2ckfC01 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.53 44.0 2.96e-01 100.0% 45.5%
2el8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 44.0 3.91e-01 92.1% 82.4%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 38.0 3.65e-01 81.0% 90.7%
4rs6A01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.52 45.0 3.59e-01 93.7% 63.6%
5t8uB01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.52 43.0 2.97e-01 98.4% 34.1%
1cbiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 45.0 3.54e-01 100.0% 85.3%
1olrA00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.51 43.0 3.01e-01 96.8% 38.1%
1hibA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 42.0 3.28e-01 95.2% 45.3%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 39.0 3.17e-01 84.1% 82.7%
1sr4A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 40.0 3.11e-01 93.7% 62.3%
7sz2A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.51 34.0 3.12e-01 71.4% 76.1%
7ewsB02 3.30.590.10 Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › Glutamine synthetase/guanido kinase, catalytic domain 0.50 38.0 2.68e-01 88.9% 44.3%
4oo1I01 2.40.50.880 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 34.0 3.21e-01 87.3% 58.7%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3260247 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.72 46.0 4.21e-01 71.4% 49.4%
3426108 5.1.3.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.68 54.0 3.41e-01 88.9% 37.1%
4952518 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.68 59.0 4.94e-01 100.0% 60.0%
3846535 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.67 42.0 3.69e-01 71.4% 43.3%
224086 9.18.1.0 ↗ beta barrels › Lipocalins/Streptavidin 0.67 49.0 3.71e-01 77.8% 41.4%
5022798 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.67 48.0 2.83e-01 95.2% 9.8%
3782920 376.1.1.43 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › PRT6_C 0.65 48.0 3.80e-01 81.0% 63.0%
3926989 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 44.0 2.82e-01 73.0% 23.2%
3648910 331.4.1.2 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF 0.64 47.0 4.28e-01 81.0% 70.0%
4957409 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 41.0 4.43e-01 74.6% 82.0%
5020831 881.4.1.2 ↗ a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB › DUF4367 0.64 55.0 4.38e-01 100.0% 48.0%
4090709 101.1.2.8 ↗ alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C 0.64 46.0 3.90e-01 77.8% 78.0%
3272453 6.1.1.7 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › CDtoxinA 0.63 51.0 4.02e-01 90.5% 62.2%
3228776 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.62 45.0 2.91e-01 77.8% 19.0%
4970868 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.62 42.0 3.42e-01 71.4% 63.2%
3273196 223.2.1.1 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.61 54.0 4.11e-01 100.0% 60.7%
3249490 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.61 49.0 4.09e-01 90.5% 76.5%
3520733 5.1.4.16 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.61 47.0 2.99e-01 88.9% 48.9%
3388732 331.1.1.5 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N 0.61 47.0 4.34e-01 85.7% 69.4%
3468426 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.61 51.0 3.23e-01 95.2% 25.2%
4027522 331.9.1.5 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › AP4E_app_platf 0.60 46.0 4.03e-01 84.1% 66.3%
907 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.60 38.0 3.14e-01 71.4% 36.4%
3522958 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.60 49.0 3.14e-01 93.7% 26.3%
4950402 881.4.1.0 ↗ a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB 0.60 53.0 4.18e-01 100.0% 50.0%
3978531 223.1.1.58 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › 2CSK_N 0.60 47.0 3.58e-01 87.3% 45.8%
3264236 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.60 49.0 4.20e-01 90.5% 72.0%
5051984 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 41.0 3.36e-01 73.0% 83.3%
3909523 6129.1.1.0 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family 0.59 53.0 3.68e-01 100.0% 85.4%
4468720 391.1.2.3 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › SVWC 0.59 46.0 4.36e-01 82.5% 84.9%
5078190 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.59 51.0 3.39e-01 100.0% 23.8%
4255411 220.1.1.126 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ycf4 0.59 42.0 3.49e-01 74.6% 97.3%
3627280 331.23.1.0 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.59 44.0 4.21e-01 81.0% 73.3%
3222419 331.23.1.0 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.58 43.0 4.12e-01 79.4% 70.7%
3441723 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.58 48.0 3.19e-01 93.7% 25.8%
3889564 331.18.1.4 ↗ a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › COR-B 0.58 45.0 3.41e-01 85.7% 41.2%
4115428 71.1.1.2 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.58 44.0 3.20e-01 82.5% 66.7%
4030001 5.1.4.621 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Mcl1_mid 0.58 47.0 2.76e-01 98.4% 14.1%
3827726 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 46.0 3.08e-01 93.7% 34.1%
4944478 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.57 39.0 3.25e-01 73.0% 71.7%
2462240 206.1.1.11 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.57 46.0 3.11e-01 93.7% 73.7%
3785729 59.1.1.5 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Dcc1 0.57 40.0 3.66e-01 76.2% 80.0%
3233725 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.57 44.0 3.39e-01 88.9% 64.4%
3404272 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.56 42.0 3.17e-01 79.4% 43.8%
3386233 314.1.1.6 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB 0.56 45.0 3.34e-01 88.9% 45.1%
3747619 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 46.0 2.93e-01 95.2% 37.5%
3716580 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 46.0 3.49e-01 90.5% 72.7%
3282808 241.11.1.5 ↗ a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › DUF5655 0.55 47.0 3.80e-01 95.2% 64.5%
5003161 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 39.0 2.86e-01 81.0% 96.8%
None — 0.55 44.0 2.80e-01 93.7% 22.6%
3236407 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.55 40.0 3.51e-01 77.8% 56.8%
3470449 4357.1.1.0 ↗ beta barrels › WWE domain › WWE domain › WWE domain 0.55 39.0 3.61e-01 76.2% 58.7%
3429270 5.1.5.93 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_EMC1_N 0.54 43.0 2.64e-01 93.7% 17.9%
3068553 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.54 41.0 3.14e-01 85.7% 65.1%
3708710 5.1.4.169 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.54 42.0 2.44e-01 93.7% 10.6%
3422937 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.54 40.0 4.11e-01 84.1% 100.0%
4155766 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.54 41.0 2.80e-01 88.9% 47.6%
3592050 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 47.0 3.68e-01 98.4% 83.7%
5008200 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 40.0 3.91e-01 85.7% 95.7%
3605584 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 47.0 3.66e-01 98.4% 74.1%
3514432 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.53 38.0 2.90e-01 77.8% 44.2%
4523246 391.1.2.3 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › SVWC 0.53 40.0 4.02e-01 82.5% 95.4%
3173706 304.102.1.1 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 0.52 38.0 2.69e-01 85.7% 21.2%
3706899 6.1.1.15 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Ins145_P3_rec 0.51 37.0 2.82e-01 82.5% 37.8%
3762084 6.1.1.3 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › IL1 0.51 42.0 3.27e-01 95.2% 45.3%
3933562 4357.1.1.3 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE_2 0.51 35.0 2.67e-01 74.6% 49.1%
D2 high residues 187-251
PDB
Domain cluster: rep: NC_048187.1__YP_009822666.1__HOV44_gp075__00075__D34-92