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KR560069.1__AKO61574.1__X__00022

Bact-Vir

KR560069.1__AKO61574.1__X__00022

Identity

Accession:
KR560069 ↗
Kingdom:
phage

Quality

78.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Menderavirus› Stenotrophomonas_phage_IME-SM1

TaxID: 1654717

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 72-136
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gjsA00 1.10.8.40 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Albumin-binding domain 0.75 43.0 4.37e-01 76.9% 56.9%
1flcB00 3.90.20.10 Alpha Beta › Alpha-Beta Complex › Hemagglutinin Ectodomain; Chain B › 0.67 37.0 2.76e-01 83.1% 22.2%
1rsgA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 45.0 3.09e-01 83.1% 83.7%
3vkgA02 1.20.140.100 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Dynein motor heavy chain, linker domain, N-terminal subdomain 0.58 42.0 3.27e-01 98.5% 34.0%
1v4gA01 6.10.140.800 Special › Helix non-globular › Helix Hairpins › 0.58 39.0 3.93e-01 80.0% 68.1%
8igrI01 2.40.270.10 Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 0.58 47.0 3.56e-01 95.4% 80.1%
6oi7A01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.54 49.0 3.44e-01 100.0% 34.7%
4akgA02 1.20.140.100 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Dynein motor heavy chain, linker domain, N-terminal subdomain 0.53 41.0 3.00e-01 83.1% 50.6%
1wi0A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 45.0 3.77e-01 98.5% 86.7%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4956419 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.76 62.0 4.91e-01 86.2% 54.5%
4934732 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.76 62.0 4.93e-01 86.2% 55.8%
5024938 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.75 61.0 4.76e-01 86.2% 51.5%
5032057 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.75 61.0 4.86e-01 86.2% 57.5%
4996551 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.73 59.0 4.50e-01 86.2% 49.3%
3895420 376.1.1.47 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › HECA 0.59 43.0 3.75e-01 78.5% 51.0%
4581714 1037.1.1.1 ↗ alpha bundles › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › LGT 0.56 48.0 3.27e-01 96.9% 79.2%
4086368 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.52 45.0 3.24e-01 100.0% 45.6%
3640667 5069.1.1.4 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Ferric_reduct 0.51 46.0 3.12e-01 100.0% 30.6%
3737536 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.51 41.0 2.77e-01 93.8% 66.6%
D2 medium residues 1-71_137-187
PDB
Domain cluster: rep: IMGVR_UViG_3300025322_000015-3300025322-Ga0209641_1000006447__D1-66_123-173
D3 medium residues 188-239
PDB