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KR560069.1__AKO61689.1__X__00137
Bact-VirKR560069.1__AKO61689.1__X__00137
Identity
- Accession:
- KR560069 ↗
- Kingdom:
- phage
Quality
96.4
mean pLDDT
Taxonomy
TaxID: 1654717
Cluster
View cluster (5 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-28_67-105
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01227.28 best | GTP_cyclohydroI | 54.3 | 1.70e-14 | 76.1% | 21.8% |
CATH (2)
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4074298 | 230.1.1.2 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GTP_cyclohydroI | 0.90 | 85.0 | 5.81e-01 | 100.0% | 53.0% |
| 4024225 | 230.1.1.2 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GTP_cyclohydroI | 0.90 | 85.0 | 5.88e-01 | 100.0% | 53.2% |
| 4423132 | 230.1.1.2 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GTP_cyclohydroI | 0.88 | 84.0 | 5.76e-01 | 100.0% | 51.3% |
| 3663526 | 230.1.1.2 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GTP_cyclohydroI | 0.88 | 82.0 | 5.61e-01 | 100.0% | 54.1% |
| None | — | 0.86 | 82.0 | 5.75e-01 | 100.0% | 55.0% | |
| 4173308 | 230.1.1.2 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GTP_cyclohydroI | 0.86 | 81.0 | 5.73e-01 | 100.0% | 55.0% |
| 4990176 | 230.1.1.2 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GTP_cyclohydroI | 0.85 | 79.0 | 5.72e-01 | 100.0% | 57.1% |
| 3322236 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.56 | 47.0 | 4.58e-01 | 97.0% | 80.0% |
| 3720341 | 109.26.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nucleoporin_C | 0.52 | 46.0 | 3.12e-01 | 100.0% | 86.4% |
D2
medium
residues 29-66_106-155
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01227.28 best | GTP_cyclohydroI | 39.3 | 6.40e-10 | 70.5% | 29.0% |
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1a8rA02 | 3.30.1130.10 | Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain | 0.92 | 89.0 | 7.42e-01 | 100.0% | 89.7% |
| 4uqfA02 | 3.30.1130.10 | Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain | 0.89 | 86.0 | 7.22e-01 | 100.0% | 91.8% |
| 1o8vA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.75 | 39.0 | 3.34e-01 | 84.1% | 33.1% |
| 1wzlA04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.70 | 36.0 | 3.74e-01 | 78.4% | 51.8% |
| 2zwrB00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.68 | 36.0 | 2.69e-01 | 76.1% | 21.3% |
| 3holA03 | 2.40.128.240 | Mainly Beta › Beta Barrel › Lipocalin › | 0.67 | 40.0 | 4.03e-01 | 77.3% | 58.4% |
| 1uuzB00 | 3.40.1420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme | 0.66 | 51.0 | 4.49e-01 | 100.0% | 56.2% |
| 4pn0C00 | 3.20.100.10 | Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › mRNA triphosphatase Cet1-like | 0.65 | 56.0 | 3.93e-01 | 92.0% | 59.4% |
| 6gp1A00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.61 | 37.0 | 4.15e-01 | 77.3% | 81.5% |
| 2it9A00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.61 | 35.0 | 3.17e-01 | 78.4% | 39.2% |
| 3w9kA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.60 | 42.0 | 3.68e-01 | 100.0% | 47.4% |
| 3zghA00 | 2.60.40.3400 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 45.0 | 3.61e-01 | 81.8% | 78.0% |
| 1l0oA00 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.59 | 45.0 | 3.84e-01 | 81.8% | 97.9% |
| 1tu1A00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.57 | 43.0 | 3.65e-01 | 80.7% | 83.3% |
| 1a2vA03 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.56 | 49.0 | 3.11e-01 | 96.6% | 57.9% |
| 3k44B00 | 3.30.2450.30 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › | 0.55 | 42.0 | 3.60e-01 | 80.7% | 92.1% |
| 2qmlA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 48.0 | 3.76e-01 | 100.0% | 58.5% |
| 2b1xB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 40.0 | 3.30e-01 | 79.5% | 82.0% |
| 2cztA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.54 | 46.0 | 3.84e-01 | 95.5% | 81.9% |
| 1dmlA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.53 | 39.0 | 2.82e-01 | 79.5% | 50.6% |
| 2lyxA00 | 3.10.450.390 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Protein of unknown function DUF3889 | 0.52 | 35.0 | 3.55e-01 | 76.1% | 70.1% |
| 2jlpB00 | 2.60.40.200 | Mainly Beta › Sandwich › Immunoglobulin-like › Superoxide dismutase, copper/zinc binding domain | 0.52 | 46.0 | 3.77e-01 | 100.0% | 100.0% |
| 5kkuD00 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.50 | 40.0 | 2.97e-01 | 100.0% | 28.9% |
| 3s2cJ01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.50 | 44.0 | 3.79e-01 | 98.9% | 88.6% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5749 | 230.1.1.2 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GTP_cyclohydroI | 0.92 | 89.0 | 6.30e-01 | 100.0% | 55.2% |
| 4423132 | 230.1.1.2 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GTP_cyclohydroI | 0.90 | 87.0 | 6.43e-01 | 100.0% | 62.6% |
| 3207298 | 230.1.1.2 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GTP_cyclohydroI | 0.90 | 87.0 | 6.24e-01 | 100.0% | 56.7% |
| None | — | 0.90 | 86.0 | 6.50e-01 | 98.9% | 67.2% | |
| 4519113 | 230.1.1.2 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GTP_cyclohydroI | 0.90 | 85.0 | 6.42e-01 | 97.7% | 66.7% |
| 4173308 | 230.1.1.2 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GTP_cyclohydroI | 0.90 | 84.0 | 6.39e-01 | 97.7% | 67.2% |
| 3365873 | 230.1.1.2 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GTP_cyclohydroI | 0.90 | 86.0 | 5.31e-01 | 100.0% | 30.2% |
| 4074298 | 230.1.1.2 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GTP_cyclohydroI | 0.89 | 86.0 | 6.28e-01 | 100.0% | 62.5% |
| 4108348 | 230.1.1.2 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GTP_cyclohydroI | 0.89 | 83.0 | 6.15e-01 | 97.7% | 62.1% |
| 3680284 | 230.1.1.2 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GTP_cyclohydroI | 0.88 | 84.0 | 6.20e-01 | 100.0% | 62.0% |
| 4441969 | 230.1.1.2 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GTP_cyclohydroI | 0.87 | 82.0 | 6.22e-01 | 100.0% | 65.9% |
| 4024225 | 230.1.1.2 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GTP_cyclohydroI | 0.81 | 74.0 | 5.53e-01 | 95.5% | 64.2% |
| 4990176 | 230.1.1.2 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GTP_cyclohydroI | 0.78 | 75.0 | 5.80e-01 | 100.0% | 66.5% |
| 3995797 | 220.1.1.160 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD | 0.75 | 39.0 | 4.52e-01 | 76.1% | 69.2% |
| 2998372 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.73 | 37.0 | 4.69e-01 | 84.1% | 83.0% |
| 3943894 | 77.1.1.7 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › DUF1481 | 0.72 | 44.0 | 3.88e-01 | 84.1% | 43.2% |
| 4012524 | 109.3.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 | 0.71 | 39.0 | 2.57e-01 | 76.1% | 13.1% |
| 3203571 | 9.13.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › DUF3237 | 0.69 | 49.0 | 4.20e-01 | 79.5% | 47.1% |
| 5015778 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.67 | 45.0 | 3.24e-01 | 97.7% | 23.0% |
| 3192104 | 3385.1.1.0 ↗ | beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 | 0.66 | 42.0 | 3.77e-01 | 80.7% | 46.4% |
| 5791 | 295.1.1.6 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF1818 | 0.66 | 37.0 | 3.34e-01 | 79.5% | 39.5% |
| 4883064 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.65 | 43.0 | 3.09e-01 | 80.7% | 24.3% |
| 3656680 | 243.1.1.41 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Coa1 | 0.60 | 45.0 | 3.89e-01 | 83.0% | 51.1% |
| 3434245 | 9.3.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › DUF2921_N | 0.60 | 45.0 | 3.58e-01 | 79.5% | 45.9% |
| 3714612 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.56 | 49.0 | 4.04e-01 | 98.9% | 84.8% |
| 3293131 | 5084.5.1.3 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 | 0.56 | 41.0 | 3.02e-01 | 85.2% | 27.8% |
| 3990496 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.55 | 35.0 | 3.78e-01 | 100.0% | 80.0% |
| 3171508 | 4252.1.1.5 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › Svf1 | 0.54 | 44.0 | 3.17e-01 | 86.4% | 89.2% |
| 5003221 | 241.15.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain | 0.53 | 40.0 | 3.69e-01 | 81.8% | 73.9% |
| 3867103 | 3417.1.1.1 ↗ | a+b three layers › Surfactant protein C BRICHOS domain › Surfactant protein C BRICHOS domain › Surfactant protein C BRICHOS domain › BRICHOS | 0.53 | 45.0 | 4.24e-01 | 92.0% | 87.6% |
| 4008120 | 5.1.5.139 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF1481 | 0.52 | 40.0 | 3.68e-01 | 83.0% | 60.8% |
| 4983936 | 3692.1.1.1 ↗ | a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall | 0.52 | 45.0 | 3.92e-01 | 98.9% | 63.0% |
| 4933284 | 3692.1.1.1 ↗ | a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall | 0.52 | 44.0 | 3.81e-01 | 96.6% | 63.2% |
| 5022891 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.51 | 36.0 | 3.32e-01 | 72.7% | 80.0% |
| 3702318 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.51 | 45.0 | 3.32e-01 | 97.7% | 89.1% |
| 5071965 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.51 | 37.0 | 3.62e-01 | 76.1% | 73.7% |