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KR816341.1__AKQ06876.1__X__00017
Bact-VirKR816341.1__AKQ06876.1__X__00017
Identity
- Accession:
- KR816341 ↗
- Kingdom:
- phage
Quality
82.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-80
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3mc1A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.70 | 53.0 | 5.65e-01 | 100.0% | 92.5% |
| 2wy4A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.65 | 52.0 | 4.37e-01 | 89.6% | 87.1% |
| 5jzeA00 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.64 | 54.0 | 4.36e-01 | 97.4% | 71.7% |
| 2nrlA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.63 | 50.0 | 4.15e-01 | 88.3% | 89.0% |
| 1rykA00 | 1.10.1470.10 | Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ | 0.63 | 46.0 | 4.85e-01 | 100.0% | 88.4% |
| 2wtbA03 | 1.10.1040.50 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › | 0.61 | 42.0 | 3.17e-01 | 71.4% | 100.0% |
| 2vxdA00 | 1.10.10.2100 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Nucleophosmin, C-terminal domain | 0.61 | 38.0 | 4.33e-01 | 87.0% | 88.9% |
| 4nleA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.61 | 52.0 | 5.26e-01 | 100.0% | 97.4% |
| 7oiyA01 | 3.90.70.130 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.61 | 51.0 | 3.77e-01 | 100.0% | 61.8% |
| 2rcnA03 | 1.10.40.50 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Probable gtpase engc; domain 3 | 0.59 | 42.0 | 4.48e-01 | 97.4% | 93.5% |
| 2om6A02 | 1.10.150.400 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.59 | 50.0 | 5.02e-01 | 100.0% | 96.2% |
| 3bkxA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 51.0 | 3.52e-01 | 98.7% | 34.1% |
| 3umbA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.58 | 47.0 | 4.73e-01 | 92.2% | 100.0% |
| 1f5qB02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.58 | 47.0 | 3.95e-01 | 90.9% | 76.8% |
| 1x42A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.58 | 50.0 | 4.89e-01 | 98.7% | 95.2% |
| 2w02B01 | 1.10.150.640 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle | 0.58 | 39.0 | 4.05e-01 | 100.0% | 73.0% |
| 1p6rA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 40.0 | 4.00e-01 | 74.0% | 68.3% |
| 3fblA00 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 39.0 | 3.87e-01 | 98.7% | 65.9% |
| 2f2cA02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.57 | 49.0 | 4.48e-01 | 100.0% | 73.6% |
| 2fe1A00 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.56 | 46.0 | 3.84e-01 | 98.7% | 52.3% |
| 3fbzA01 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 39.0 | 3.53e-01 | 97.4% | 53.9% |
| 3e1sA01 | 1.10.10.2220 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.56 | 43.0 | 4.06e-01 | 84.4% | 78.9% |
| 3umgA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.55 | 42.0 | 4.34e-01 | 88.3% | 90.1% |
| 4gbjC02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.55 | 38.0 | 3.20e-01 | 71.4% | 84.4% |
| 2a8pA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.54 | 41.0 | 3.11e-01 | 81.8% | 84.4% |
| 3s64A00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.54 | 39.0 | 3.89e-01 | 76.6% | 81.5% |
| 3kheA01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.54 | 44.0 | 4.04e-01 | 93.5% | 82.2% |
| 2n1rA00 | 1.10.150.90 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Immunodeficiency lentiviruses, gag gene matrix protein p17 | 0.53 | 44.0 | 3.72e-01 | 92.2% | 79.9% |
| 2vk9A03 | 1.10.3730.30 | Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › | 0.53 | 45.0 | 4.17e-01 | 94.8% | 89.8% |
| 1jt6A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 38.0 | 3.20e-01 | 77.9% | 75.9% |
| 2fu2A00 | 1.20.1440.50 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like | 0.51 | 36.0 | 3.68e-01 | 74.0% | 100.0% |
| 2a3vB01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.50 | 44.0 | 4.10e-01 | 94.8% | 80.9% |
| 2au5A00 | 1.20.120.590 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › EF2947-like | 0.50 | 45.0 | 3.80e-01 | 100.0% | 86.8% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3701483 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.68 | 54.0 | 5.51e-01 | 100.0% | 88.0% |
| 3976180 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.67 | 57.0 | 4.22e-01 | 96.1% | 41.9% |
| 3386119 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.65 | 56.0 | 4.08e-01 | 97.4% | 36.4% |
| 5003145 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.65 | 52.0 | 3.75e-01 | 100.0% | 30.0% |
| 3932917 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 47.0 | 4.50e-01 | 90.9% | 67.8% |
| 5078806 | 601.7.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like | 0.63 | 42.0 | 3.56e-01 | 94.8% | 40.8% |
| 3648390 | 103.2.1.3 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › PF28345 | 0.63 | 54.0 | 5.24e-01 | 100.0% | 96.7% |
| 5074271 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.63 | 54.0 | 3.94e-01 | 98.7% | 52.0% |
| 5081699 | 186.1.1.4 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 | 0.63 | 43.0 | 4.09e-01 | 90.9% | 61.1% |
| 2075049 | 3787.1.1.0 ↗ | alpha bundles › HAD superfamily helical bundle insertion domain | 0.62 | 55.0 | 5.31e-01 | 100.0% | 100.0% |
| 3310491 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.58 | 38.0 | 4.21e-01 | 88.3% | 86.7% |
| 5082139 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.58 | 46.0 | 3.87e-01 | 84.4% | 65.6% |
| 3300095 | 592.1.1.1 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain › PWI | 0.57 | 39.0 | 4.23e-01 | 87.0% | 84.6% |
| 3474421 | 101.1.2.365 ↗ | alpha arrays › HTH › HTH › winged helix domain › DEK_C | 0.57 | 37.0 | 3.85e-01 | 84.4% | 71.4% |
| 3495148 | 219.1.1.41 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C78 | 0.57 | 49.0 | 3.91e-01 | 100.0% | 90.9% |
| 3475614 | 186.2.1.1 ↗ | alpha arrays › lambda integrase-N-like › VEFS domain › VEFS domain › VEFS-Box | 0.56 | 41.0 | 3.44e-01 | 76.6% | 79.2% |
| 3732287 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.56 | 42.0 | 3.65e-01 | 79.2% | 88.3% |
| 5002376 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 38.0 | 3.47e-01 | 89.6% | 51.4% |
| 3453690 | 4326.1.1.1 ↗ | a+b two layers › ERH-like › ERH-like › ERH-like › ER | 0.56 | 46.0 | 4.35e-01 | 90.9% | 78.9% |
| 3738680 | 109.4.1.601 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PLU-1 | 0.56 | 39.0 | 2.87e-01 | 74.0% | 67.6% |
| 4994809 | 1075.3.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold | 0.56 | 44.0 | 3.38e-01 | 87.0% | 92.4% |
| 3487368 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.56 | 42.0 | 4.51e-01 | 97.4% | 95.4% |
| 3574000 | 109.4.1.70 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID | 0.56 | 44.0 | 3.51e-01 | 87.0% | 73.1% |
| 3613245 | 3431.1.1.0 ↗ | alpha bundles › Helical domain in autophagy protein 5 › Helical domain in autophagy protein 5 › Helical domain in autophagy protein 5 | 0.55 | 38.0 | 3.60e-01 | 71.4% | 65.6% |
| 4927557 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.55 | 39.0 | 3.48e-01 | 97.4% | 50.4% |
| 5058510 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.54 | 39.0 | 3.47e-01 | 75.3% | 52.7% |
| 4928737 | 592.2.1.0 ↗ | alpha arrays › PWI domain-like › YugE-like › YugE-like | 0.54 | 46.0 | 4.36e-01 | 97.4% | 89.5% |
| 4994385 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.54 | 46.0 | 3.38e-01 | 100.0% | 55.7% |
| 3630268 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.54 | 37.0 | 3.40e-01 | 72.7% | 78.1% |
| 3907742 | 101.1.1.65 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 | 0.52 | 36.0 | 3.55e-01 | 85.7% | 67.1% |
| 184601 | 633.2.1.1 ↗ | alpha bundles › Bromodomain-like › Carnobacteriocin B2 immunity protein › Carnobacteriocin B2 immunity protein › EntA_Immun | 0.51 | 36.0 | 3.68e-01 | 74.0% | 100.0% |
| 3562276 | 389.1.1.119 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › BRINP | 0.51 | 45.0 | 4.12e-01 | 94.8% | 88.0% |
| 3488990 | 109.4.1.70 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID | 0.51 | 39.0 | 3.13e-01 | 81.8% | 61.3% |
| 5022395 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.51 | 39.0 | 3.11e-01 | 88.3% | 39.4% |
| 3723459 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.51 | 43.0 | 3.95e-01 | 100.0% | 90.5% |
| 3995298 | 109.4.1.506 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nop14 | 0.51 | 41.0 | 2.73e-01 | 90.9% | 36.5% |
| 4304666 | 532.1.1.0 ↗ | alpha arrays › Type III secretion system domain-like › Antibiotic binding domain of TipA-like multidrug resistance regulators › Antibiotic binding domain of TipA-like multidrug resistance regulators | 0.50 | 38.0 | 3.52e-01 | 85.7% | 62.0% |