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KR869820.1__AKR16045.1__X__00199

Bact-Vir

KR869820.1__AKR16045.1__X__00199

Identity

Accession:
KR869820 ↗
Kingdom:
phage

Quality

88.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Pseudotevenvirus› Citrobacter_phage_IME-CF2

TaxID: 1673887

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-58
PDB
D2 high residues 320-407
PDB
Domain cluster: rep: IMGVR_UViG_3300010235_000004-3300010235-Ga0136247_100002931__D99-185
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13884.12 best Peptidase_S74 43.6 3.90e-11 55.7% 81.0%
D3 medium residues 88-135
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.70 62.0 3.70e-01 100.0% 30.8%
1jovA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.69 59.0 3.66e-01 97.9% 17.1%
2htaA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.68 57.0 3.51e-01 97.9% 15.5%
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.66 46.0 4.26e-01 72.9% 70.0%
1k1yB02 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.65 55.0 3.52e-01 97.9% 19.0%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 52.0 4.50e-01 89.6% 60.5%
2jkbA02 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.64 54.0 3.23e-01 100.0% 23.5%
2ra8A01 2.20.140.10 Mainly Beta › Single Sheet › q64v53_bacfr protein fold › WGR domain 0.64 48.0 4.28e-01 85.4% 58.1%
7fisA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.63 53.0 3.34e-01 100.0% 32.2%
3h3lC00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.63 50.0 3.35e-01 95.8% 72.6%
1j0wB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 55.0 4.33e-01 100.0% 68.0%
2af5A01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.63 50.0 4.86e-01 91.7% 81.5%
5e1qA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.63 48.0 3.87e-01 85.4% 100.0%
4ktpB02 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.62 48.0 4.16e-01 89.6% 93.9%
2nugB02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 49.0 4.46e-01 93.8% 74.6%
7bwcA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.62 50.0 3.15e-01 100.0% 32.8%
3e9mB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.62 52.0 3.53e-01 100.0% 62.1%
3ugfB02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.61 52.0 3.57e-01 100.0% 44.1%
3tfmA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 51.0 3.92e-01 93.8% 66.1%
3d4eA01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.61 46.0 4.05e-01 91.7% 53.6%
5gtqA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.61 52.0 3.19e-01 100.0% 24.8%
4nsxA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 50.0 3.08e-01 95.8% 23.5%
1ea9C04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 45.0 3.87e-01 85.4% 100.0%
3d33A00 2.60.40.3080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 48.0 3.93e-01 91.7% 73.4%
1omoA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.59 46.0 3.52e-01 100.0% 48.3%
2l33A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 47.0 3.99e-01 97.9% 68.1%
1k90A02 3.90.1760.10 Alpha Beta › Alpha-Beta Complex › Adenylylcyclase toxin fold › Anthrax toxin, edema factor, central domain 0.57 45.0 3.32e-01 100.0% 32.7%
3mepA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 43.0 3.07e-01 91.7% 53.6%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.56 49.0 3.71e-01 100.0% 47.5%
3fm8D03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 45.0 3.52e-01 93.8% 67.6%
1u5dA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 44.0 3.53e-01 95.8% 73.1%
6mv2A01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 38.0 3.08e-01 83.3% 73.5%
2b5uA03 3.10.380.10 Alpha Beta › Roll › Ribonuclease domain of colicin e3 (Residues 456-551) › Colicin E3-like ribonuclease domain 0.51 40.0 3.39e-01 100.0% 56.1%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.50 40.0 3.76e-01 100.0% 84.8%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3969359 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.72 60.0 3.69e-01 100.0% 15.3%
4962687 4972.1.1.1 ↗ beta barrels › barrel domain in CV3147-like proteins › barrel domain in CV3147-like proteins › barrel domain in CV3147-like proteins › DUF917_C 0.72 55.0 4.16e-01 100.0% 33.6%
5047088 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.72 57.0 3.72e-01 91.7% 20.5%
5044805 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.71 58.0 5.11e-01 89.6% 65.7%
3968451 12.3.1.3 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim 0.71 58.0 3.58e-01 97.9% 15.5%
1171964 809.2.1.0 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.69 53.0 5.00e-01 83.3% 69.0%
5011042 3692.1.1.0 ↗ a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain 0.68 59.0 4.35e-01 100.0% 46.2%
5077760 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.67 60.0 3.42e-01 100.0% 24.5%
3812869 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.66 56.0 4.54e-01 100.0% 54.0%
4032422 5.1.2.14 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Phage_RBD_prop 0.66 57.0 3.50e-01 100.0% 27.7%
3342267 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.65 53.0 3.69e-01 93.8% 36.7%
3214923 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.65 47.0 3.19e-01 85.4% 20.0%
3172098 243.6.1.4 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA 0.65 56.0 4.61e-01 100.0% 76.7%
3483397 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 55.0 3.19e-01 100.0% 22.3%
3471260 5.1.4.661 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR36-Utp21_1st 0.64 53.0 3.22e-01 95.8% 21.5%
3793430 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.63 54.0 4.40e-01 100.0% 63.2%
3221612 12.3.1.42 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › DUF2152 0.62 52.0 3.45e-01 100.0% 50.7%
3794065 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.62 52.0 3.11e-01 100.0% 20.6%
3782244 4099.1.1.10 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med1 0.62 51.0 4.13e-01 97.9% 61.0%
3410261 5.1.4.116 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › IKI3 0.61 50.0 3.25e-01 95.8% 30.6%
2998372 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.61 48.0 4.76e-01 100.0% 83.0%
1688207 5.1.3.23 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL 0.61 51.0 3.18e-01 100.0% 24.8%
4998507 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.60 47.0 4.64e-01 89.6% 79.6%
3769451 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 52.0 3.20e-01 100.0% 25.2%
3588455 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.59 42.0 3.83e-01 81.2% 54.3%
3276134 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 52.0 3.84e-01 100.0% 61.6%
3575027 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.59 48.0 3.82e-01 89.6% 44.0%
3408563 5.1.4.661 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR36-Utp21_1st 0.59 48.0 3.04e-01 100.0% 24.7%
5046585 66.1.1.0 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain 0.59 43.0 3.98e-01 85.4% 60.0%
5036807 3111.1.1.0 ↗ beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain 0.58 48.0 3.98e-01 100.0% 53.7%
4486877 3297.1.1.28 ↗ extended segments › Helical hairpin in Ndc80 › Helical hairpin in Ndc80 › Helical hairpin in Ndc80 › WD40, Beta-prop_NOL10_N 0.57 47.0 2.85e-01 100.0% 21.5%
2817443 5.1.4.37 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.57 45.0 2.67e-01 100.0% 19.6%
1513168 809.1.1.4 ↗ a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › DUF4309 0.56 42.0 3.84e-01 83.3% 65.7%
3666671 12.1.1.63 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Raffinose_syn 0.52 40.0 3.37e-01 95.8% 98.0%
D4 medium residues 153-198
PDB
Domain cluster: rep: OM971649.1__UQJ95410.1__ALHIDCOG_00022__00022__D57-94
D5 medium residues 236-319
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4mmhA02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.68 50.0 3.45e-01 77.4% 78.0%
3bk5A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.65 44.0 3.22e-01 70.2% 30.2%
4k35A02 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.64 46.0 3.47e-01 76.2% 99.0%
1imvA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.63 43.0 3.40e-01 70.2% 87.6%
4g7nA02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.63 40.0 3.83e-01 73.8% 55.7%
3cegA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.61 44.0 3.09e-01 78.6% 58.9%
2wqlA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 49.0 4.03e-01 88.1% 59.9%
4fnvA02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.60 47.0 3.34e-01 88.1% 70.2%
8eg0B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 42.0 2.78e-01 75.0% 49.1%
4n9jA02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.58 41.0 3.80e-01 73.8% 58.9%
6fcvB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 43.0 2.81e-01 81.0% 36.7%
8hbfB02 3.30.450.260 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem NO binding associated domain 0.56 41.0 3.60e-01 79.8% 74.4%
2wsuA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 38.0 3.22e-01 71.4% 66.9%
3doaA01 2.30.310.10 Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain 0.54 41.0 3.44e-01 82.1% 82.4%
3wucB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 39.0 3.34e-01 79.8% 78.8%
4z32C02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.50 34.0 3.31e-01 71.4% 72.7%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3227619 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.74 54.0 4.16e-01 77.4% 40.5%
3516397 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.73 54.0 4.12e-01 77.4% 37.8%
2872975 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.72 51.0 3.97e-01 76.2% 35.2%
3618896 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.68 49.0 5.53e-01 79.8% 98.4%
1841016 79.1.1.9 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Gp34_trimer 0.66 58.0 4.21e-01 96.4% 45.1%
2417913 243.19.1.0 ↗ a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.65 59.0 3.78e-01 100.0% 35.6%
None — 0.59 50.0 3.67e-01 94.0% 40.8%
3932783 7579.1.1.14 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_3 0.58 49.0 3.43e-01 95.2% 78.3%
3570911 4291.1.1.1 ↗ beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.58 49.0 3.26e-01 95.2% 71.1%
4436563 5.1.4.171 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › HELP+Beta-prop_EML 0.56 39.0 2.64e-01 72.6% 29.1%
4099513 5.1.4.307 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF29630 0.55 41.0 2.64e-01 82.1% 34.3%
3416317 11.10.1.4 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › TRAF-mep_MATH 0.55 40.0 3.25e-01 76.2% 86.7%
3736837 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.54 37.0 3.46e-01 70.2% 75.2%
3712870 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 40.0 2.61e-01 79.8% 48.0%
3789082 4291.1.1.1 ↗ beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.54 45.0 2.94e-01 95.2% 34.8%
1544904 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.52 39.0 3.34e-01 79.8% 78.8%
3583444 9.1.1.12 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › THAP4_heme-bd 0.52 42.0 3.78e-01 88.1% 85.2%
3836190 5.1.4.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.51 40.0 2.56e-01 88.1% 70.2%
3504319 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 38.0 2.63e-01 81.0% 31.6%